Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G59780 126 / 2e-34 Rhodanese/Cell cycle control phosphatase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G128300 [exp] 163 / 1e-47 AT3G59780 610 / 0.0 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) Potri.019G098001 [exp] 110 / 2e-30 AT3G59780 91 / 8e-21 Rhodanese/Cell cycle control phosphatase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027050 [exp] 112 / 3e-29 AT3G59780 562 / 0.0 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) Lus10025587 [exp] 111 / 7e-29 AT3G59780 510 / 5e-173 Rhodanese/Cell cycle control phosphatase superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.014G182410.1 pacid=42762736 polypeptide=Potri.014G182410.1.p locus=Potri.014G182410 ID=Potri.014G182410.1.v4.1 annot-version=v4.1 ATGGGTCCGTCTCAGAATCCAATGCTCTTGGATCTTGCATCCTCACCCAAATGGTTCTTCAAGCGTGCTCTACTGCTCTCCCTCCACAACTCACTCAAGG CTGGTTTTGATAATTTTTTGAGCGAGGTTAGGGACTCCATCAAAACTTCAGTAAATAAGGGAGGAAATGTTGTGCAAAGCTTACTAGACACAATTGCTTC TTCAATAACATCGATTAAGGAAGGTGCTTCAGAAGCAGTAGATGGTGCCTTGAGTAAAGTATTCTCAAGTTTTGATCAAACAGGAGAATTAGTTGGTGAT AGATTGACTAGCTTTTCATCTGGTTTGAGGGAAGCCACACAAAAAGCTACTGGCACTTCTGTAGATGTGCTCAGAGTTGCAATCGTTGTAGTGGAGGAAT CTATAGCAAAAGGGGCTTCTTTTGTTGTTTATTCTTATGGGCCTGCCAAGAATTTGCTTCCTCCATAG
AA sequence Show only first row Show all	>Potri.014G182410.1 pacid=42762736 polypeptide=Potri.014G182410.1.p locus=Potri.014G182410 ID=Potri.014G182410.1.v4.1 annot-version=v4.1 MGPSQNPMLLDLASSPKWFFKRALLLSLHNSLKAGFDNFLSEVRDSIKTSVNKGGNVVQSLLDTIASSITSIKEGASEAVDGALSKVFSSFDQTGELVGD RLTSFSSGLREATQKATGTSVDVLRVAIVVVEESIAKGASFVVYSYGPAKNLLPP

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G59780			Rhodanese/Cell cycle control p...		Potri.014G182410 [exp]	0	1
AT5G28150			Plant protein of unknown funct...		Potri.013G038000 [exp]	5.00	0.7524
AT5G60230		ATSEN2, SEN2	splicing endonuclease 2 (.1.2)		Potri.014G083401 [exp]	8.36	0.7101
AT4G38180	FAR1_related	FRS5	FAR1-related sequence 5 (.1)		Potri.015G139300 [exp]	8.48	0.7053
					Potri.002G067900 [exp]	16.24	0.7225
AT3G21100			RNA-binding (RRM/RBD/RNP motif...		Potri.009G050600 [exp]	20.44	0.6965
AT2G43770			Transducin/WD40 repeat-like su...		Potri.013G128001 [exp]	32.44	0.6274
AT1G76630			Tetratricopeptide repeat (TPR)...		Potri.002G001700 [exp]	54.68	0.6426
AT2G39910			ARM repeat superfamily protein...		Potri.008G063500 [exp]	61.44	0.6728
AT2G27040		OCP11, AGO4	OVEREXPRESSOR OF CATIONIC PERO...		Potri.006G025900 [exp]	89.59	0.6576	AGO913
AT1G55790			Domain of unknown function (DU...		Potri.003G101200 [exp]	104.79	0.6366

Compare expression of checked genes

Potri.014G182410 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.