Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G80260 321 / 5e-103 EMB1427 embryo defective 1427, Spc97 / Spc98 family of spindle pole body (SBP) component (.1) AT1G20570 310 / 5e-99 Spc97 / Spc98 family of spindle pole body (SBP) component (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G000100 [exp] 118 / 7e-30 AT1G80260 431 / 3e-137 embryo defective 1427, Spc97 / Spc98 family of spindle pole body (SBP) component (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018892 [exp] 340 / 2e-110 AT1G80260 919 / 0.0 embryo defective 1427, Spc97 / Spc98 family of spindle pole body (SBP) component (.1) Lus10028588 [exp] 338 / 8e-110 AT1G80260 942 / 0.0 embryo defective 1427, Spc97 / Spc98 family of spindle pole body (SBP) component (.1) Lus10028670 [exp] 42 / 0.0002 AT2G17970 249 / 5e-81 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0540 [poplar] [flax] GCP PF04130 [poplar] [flax] GCP_C_terminal Gamma tubulin complex component C-terminal
Representative CDS sequence Show only first row Show all	>Potri.014G184801.1 pacid=42763309 polypeptide=Potri.014G184801.1.p locus=Potri.014G184801 ID=Potri.014G184801.1.v4.1 annot-version=v4.1 ATGAAAACTGGTGCTGTGGATGAATTTCCCCTACAGGGAACATTCTTTCCAGAAAATCCAGCTATCACTGCATGTCAAAGTTTGCTTGACAAGAATAGAG ATTCCTGGAAAATGTTGAACTTATCTAAAAATTTCTACCTACCTCCTTTGAATGATGAGGTCTTACGACATGCCATATTTGGTGGAGAAAATGGACCAGT TTCTGCTGTCAAAGGAACAGACTATGCCTTTGGTTTTCAATTTGGTGTATCTGATTATGATGATTCACAGAATGACACCAAACTGTTGGAAGTCTTGTTT CCTTTTCCCACTGTTCTTCCTTCTTTTCAGGATGATAAACGTATGTCAGAGCTTTTGCCTTTCCAAAAAAATAGCACCCTTATTTCAAGAGTTCTTAGTT GGTTTCAAAGTGTTGAACCAAGAACAACTCCACTTCCAGTGGCTATTATACAGGAATGCCTAACTTTCTACATTAAGAAACAGGTGGATTATATTGGCGG GCTCATTTTGTCAAAATTAATGAATGAATGGAGATTGATGGATGAACTTGCAGTATTGCGTGCCATATACTTGTTAGGTTCAGGTGATTTACTGCAGCAC TTTTTGACTGTGATTTTTGGTAAGCTGGACAAAGGAGAAACTTGGGATGATGATTTTGAGTTAAACACTATATTGCAGGAGTCCATTCGGAACTCCGCTG ATGGCACACTGCTAAGTGCTCCAGATTCTTTGGTTGTTTCCATCACCAAGAATCATGGTTTTGACAGTGATGAGCTGCCTAATACACCTACCCTTTCCTC AACTCCTCGTTAA
AA sequence Show only first row Show all	>Potri.014G184801.1 pacid=42763309 polypeptide=Potri.014G184801.1.p locus=Potri.014G184801 ID=Potri.014G184801.1.v4.1 annot-version=v4.1 MKTGAVDEFPLQGTFFPENPAITACQSLLDKNRDSWKMLNLSKNFYLPPLNDEVLRHAIFGGENGPVSAVKGTDYAFGFQFGVSDYDDSQNDTKLLEVLF PFPTVLPSFQDDKRMSELLPFQKNSTLISRVLSWFQSVEPRTTPLPVAIIQECLTFYIKKQVDYIGGLILSKLMNEWRLMDELAVLRAIYLLGSGDLLQH FLTVIFGKLDKGETWDDDFELNTILQESIRNSADGTLLSAPDSLVVSITKNHGFDSDELPNTPTLSSTPR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G80260		EMB1427	embryo defective 1427, Spc97 /...		Potri.014G184801 [exp]	0	1
AT4G10710		SPT16	global transcription factor C ...		Potri.005G005300 [exp]	7.34	0.7127
AT3G14120			unknown protein		Potri.001G165900 [exp]	13.41	0.7034
AT5G27540		MIRO1, EMB2473	embryo defective 2473, MIRO-re...		Potri.005G033700 [exp]	18.16	0.6258
AT3G08850		ATRAPTOR1B, RAP...	HEAT repeat ;WD domain, G-beta...		Potri.006G106600 [exp]	25.59	0.6980
AT5G15080			Protein kinase superfamily pro...		Potri.008G194700 [exp]	33.67	0.6818
AT4G38180	FAR1_related	FRS5	FAR1-related sequence 5 (.1)		Potri.015G139300 [exp]	37.56	0.6457
AT4G33210		SLOMO	SLOW MOTION, F-box family prot...		Potri.018G048700 [exp]	38.36	0.6833
AT1G80260		EMB1427	embryo defective 1427, Spc97 /...		Potri.016G000100 [exp]	45.29	0.6351
AT5G15680			ARM repeat superfamily protein...		Potri.017G106100 [exp]	46.47	0.6790
AT2G02560		TIP120, HVE, ET...	HEMIVENATA, CULLIN-ASSOCIATED ...		Potri.003G000500 [exp]	49.69	0.6357	CAND1.2

Compare expression of checked genes

Potri.014G184801 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.