Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42710 195 / 2e-51 unknown protein AT3G24630 55 / 4e-07 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G261700 [exp] 1528 / 0 AT5G42710 185 / 4e-48 unknown protein Potri.018G082300 [exp] 65 / 3e-10 AT3G24630 99 / 4e-21 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016315 [exp] 586 / 0 AT5G42710 179 / 4e-46 unknown protein Lus10010806 [exp] 391 / 1e-122 AT5G42710 179 / 3e-47 unknown protein Lus10010807 [exp] 195 / 2e-55 AT5G42710 165 / 5e-46 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF14383 [poplar] [flax] VARLMGL DUF761-associated sequence motif
Representative CDS sequence Show only first row Show all	>Potri.014G185300.1 pacid=42764791 polypeptide=Potri.014G185300.1.p locus=Potri.014G185300 ID=Potri.014G185300.1.v4.1 annot-version=v4.1 ATGGCTAAGAGATCAGATTTTGCACAGAAGCTGTTGGAAGATCTCCGGTCGAGGAAGGAACGAATGGCTGTATCTCATAGCTCAGAAGGTTCAAAATCAG CTGCTCCAGATGTACATGCTTATTCCAAGCAAATACACAGAGGATCCAGAGATATGAAGACCCATAGAAGTAATGGCATTAGAAGTGGAAGTGTGCACAG TAGAACTAGTGGAAGTAATATAGCACTCTCCATTGAAGAAGTTTCAACAGAGATTGTTCCATTTGGGGGAGGTCGAAACTCCGAACAAATAGGAGATCTG TCCATGGCACTGGCTTTTGCCCTTGAGAATGGCGGAAAGCTCAGAAGAATGGATTCGTCTGGCAATAGTTCAGTGCTAGGTTTCCTGCATCAAATTGCAA GAAGACCAGTGGAAGTAAGCAAGATGGAAAGAAGCGGTATTGATAGGCATCACTCTTCAAGTAACCGTTTTCCTACACTCTCCCATCTCCACATCAAAGA AATATCAAAAGGTGCACAAAAGTTAAATCAGATCCTGAGAGCTTGTTCAAATGGCCTTAACTTTGAATCATATTCATTAGAAATTGGCAAGGAACTACTC AAAGAGGCCGTGGATTTGGAAGAGTCCTTGAGGATGCTTGTAAACCTGCAAAAAGCTTCAGAATACATGATCTGCCCACAGAGCAAATCTCGTATCACAT TGCTTGATGAGGATGAAGATGACGATGACACCTCTACCAAAAAAGCTGAGCATAACCAACTTGCTCTGCCAAGGTTCTCCTTCGACAAGCCCTCAAGAAA TTCTCATTACATCCAGAAAGTTGAAAGGACGGATCTCACGCAGAGGATAATGGCTCTGACTTATTCGTCAGAAGCTGCAAGTTTCAACCATGACAAGCAC AATTCAAGTACCTCAAATTCAGTTTCTCACAAGAAATCATCTAGCTATGGCTCAACTTCTAAAACCTTAGCAGCATTATCTGAACAGAAGAATCAGTCGA GTTCATCAAAATCCAATCCAGAGAAGGCGAGAATTCCAAATGTAATTGCAAAACTAATGGGCCTGGAGGAACTTCCAGAAAATGCAGATTCAAAGCACAC AAAGAAAGAGTCAAGTTCCAAGCAGAAAACTGAAATGAAGGTTACAAATAAATCTGCAGAAAGAAGCTCCACACGTGAACGCAAGACAAAAGATGCTGAG AATTCAGTACCCACAGTAAGAAAACAAAAGCAGATGCAGCCCAGTCAGAATAAGATGCTTCAGGATCCAAAACATGCTTTGCAAGCAGAAAAGAATCTGC CAGATCACCATGCTAGCTTTGAAATGACTATGCATGACGGAAAGCAACCGAAGAAGGATGTGAATGGGACAAAACCAGAGAAAGGCTCAAATAAAGCTAA CGTGAAAATGGAAAGGCACCAAAGCAACATCATCCAAATGAACCAAAGCACAGGAAAGCGAAAGAATGGTCAGGATAAAGAGAGAGAACAAGATAATACT AAGACCAGGGAGCAGAAAGGGAAAGAACAAGGTGAAACAAGAAAGCTAATCCGAAAGCATGAGCTGCAGCAGATGGCATCACAGGCACAAATTGGGTCCG AAGCAGCAATAACATTGGAAGGGCAAACAGAGCACAATGCAAGCATGCTTAAAATAGAAAACAGAGATGAAAACTGGCACCTTTCCAATGATCAACCAAA GTCTTCCAATGACCTTGGATTCCAACAGGCTCACACATTCCGAAACTTTCAACAACGAGACATAAAGTATCATGCAGGAGAGGGGGAGTGGCAGACTGCT AAGCAGAAGATTCAAGATAGAAGTCAAAAGGGAAGTGAAGTAATGTCCAGGAATTTTCCCACCCCCATGAACGACATTCTGAATTTCCAAAAAAGACATT CGCAGATGAACCAGGCAACTCCTGGCAGTACAAGTTCTAGAGAATCTGTTGATGAAATGCCATCCAAAGGGTTTCCAACTAACAGGCACCATGAAGATCC TGTCTACGAAAGAATTTCTAATAATAACCATGTTAAAGTGCAAGATTCAATGACCAGGTACTCGAATCAAGATTCCTCTCCAATAGATCCTAAATATGAT ATGATGGAGAAAAGCAGCACTCCAACTATGGAAGAAAAGGCAGCTCATTCACCAGCCACGCAGAAGGTGAGAAATACCATGGGACAGAAGGCAGAGACCC CTCGAAAGATGGACGAACTAGCGTCAAGAAAGTGTGGAACTCCAAACAGCTTGGCAAGGCAACAAAAACGTCAAACTTCTGCTTTGCAAGAAGGTAAGCA GAAAAGGCGCTGCAAACTTGGTGGATCTACAGTCGAACAAGTGACAGCCATCAGGTCCAGAGAAGCAGAGGCACGCATTGTTAAATCCAGCAAATCAATG GCGAACATCCAGCAACCGAATGTGTTGGAAGATCTGCATAATAAAGATGAACAAGCTTCCAACTCCTATATTCCCGTGGAAGAAGAAAGCCAAATCCTAA AAGGACCAAAAATCCTAGTTCCAAATGACAGCTGTCAAAACACAATCTCAACAGTGACGAATGAGCAACAAGGTCAAGAATTGGGCAGAGATCAACTGCA ATCTCACAACTTTGTTTTGAATTCACTTAATGAAACTCATCAAACTAGCAAAGATATCACATACCCCTCACAAGTGAAGAACCAAAAAGCATTGAAATTG GTGACACCAGAGCCGCTAAATGAGAGCGAAAATCACCTAAAGCGGATCCTGATAAAAAGTCAACTATTCCTTAACACAGCTGAGGCACTTTTCAAACTCA ACATACCTTTCGTCGTTCTCCACGCTGGTAGTCAAGACTATCACGACGAAGAAAGCAAACTCGTATTAGATTGTGGATACGAAATAATGAAAAGAAAAGG CAAAAAGCAAGAGCTCAGTGTCCATCCATTCATGAAAATATCAGTCACCTCTATTAAGGTAAAATCCTTGGACACCTTGGTCAAGCTATTGTACAAAGAC CTCGAGAAGTTAAAACTCTACTGTAGAAATGGTAATGCTGAATGTCTTACTCCTGTCGAAGACTACCTACCGAAAATGCTCGAATGTGATGTGTACAACT GGGATATAGATGTGAATTGTATGTGGGACTGTGGTTGGGACAAGATGATGTTTGCATTTCTTGAAAAGGATGATGTTATACGGGATGTGGAGAAGTTCGT GCTTGATGGATTGCTTGATGAAGTTGCCAAAGATCTTCTACCAGTATTCTGA
AA sequence Show only first row Show all	>Potri.014G185300.1 pacid=42764791 polypeptide=Potri.014G185300.1.p locus=Potri.014G185300 ID=Potri.014G185300.1.v4.1 annot-version=v4.1 MAKRSDFAQKLLEDLRSRKERMAVSHSSEGSKSAAPDVHAYSKQIHRGSRDMKTHRSNGIRSGSVHSRTSGSNIALSIEEVSTEIVPFGGGRNSEQIGDL SMALAFALENGGKLRRMDSSGNSSVLGFLHQIARRPVEVSKMERSGIDRHHSSSNRFPTLSHLHIKEISKGAQKLNQILRACSNGLNFESYSLEIGKELL KEAVDLEESLRMLVNLQKASEYMICPQSKSRITLLDEDEDDDDTSTKKAEHNQLALPRFSFDKPSRNSHYIQKVERTDLTQRIMALTYSSEAASFNHDKH NSSTSNSVSHKKSSSYGSTSKTLAALSEQKNQSSSSKSNPEKARIPNVIAKLMGLEELPENADSKHTKKESSSKQKTEMKVTNKSAERSSTRERKTKDAE NSVPTVRKQKQMQPSQNKMLQDPKHALQAEKNLPDHHASFEMTMHDGKQPKKDVNGTKPEKGSNKANVKMERHQSNIIQMNQSTGKRKNGQDKEREQDNT KTREQKGKEQGETRKLIRKHELQQMASQAQIGSEAAITLEGQTEHNASMLKIENRDENWHLSNDQPKSSNDLGFQQAHTFRNFQQRDIKYHAGEGEWQTA KQKIQDRSQKGSEVMSRNFPTPMNDILNFQKRHSQMNQATPGSTSSRESVDEMPSKGFPTNRHHEDPVYERISNNNHVKVQDSMTRYSNQDSSPIDPKYD MMEKSSTPTMEEKAAHSPATQKVRNTMGQKAETPRKMDELASRKCGTPNSLARQQKRQTSALQEGKQKRRCKLGGSTVEQVTAIRSREAEARIVKSSKSM ANIQQPNVLEDLHNKDEQASNSYIPVEEESQILKGPKILVPNDSCQNTISTVTNEQQGQELGRDQLQSHNFVLNSLNETHQTSKDITYPSQVKNQKALKL VTPEPLNESENHLKRILIKSQLFLNTAEALFKLNIPFVVLHAGSQDYHDEESKLVLDCGYEIMKRKGKKQELSVHPFMKISVTSIKVKSLDTLVKLLYKD LEKLKLYCRNGNAECLTPVEDYLPKMLECDVYNWDIDVNCMWDCGWDKMMFAFLEKDDVIRDVEKFVLDGLLDEVAKDLLPVF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G42710			unknown protein		Potri.014G185300 [exp]	0	1
AT4G27430		CIP7	COP1-interacting protein 7 (.1...		Potri.011G122900 [exp]	1.73	0.9270	Pt-CIP7.1
AT3G60680			Plant protein of unknown funct...		Potri.014G066600 [exp]	2.23	0.9105
AT4G36220		CYP84A1, FAH1, ...	ferulic acid 5-hydroxylase 1 (...		Potri.005G117500 [exp]	3.46	0.9131	FAH1.3
AT2G38080		ATLMCO4, IRX12,...	LACCASE 4, IRREGULAR XYLEM 12,...		Potri.010G193100 [exp]	3.46	0.9094
AT4G32010	B3	HSL1, HSI2-L1, ...	VP1/ABI3-LIKE 2, HSI2-like 1 (...		Potri.016G136500 [exp]	4.58	0.8798
AT3G21530			DNAse I-like superfamily prote...		Potri.008G198100 [exp]	4.89	0.8983
AT5G11890		EMB3135	EMBRYO DEFECTIVE 3135, unknown...		Potri.006G228600 [exp]	5.29	0.9106
AT3G01810			unknown protein		Potri.001G333200 [exp]	5.65	0.9183
AT4G27430		CIP7	COP1-interacting protein 7 (.1...		Potri.001G403700 [exp]	6.48	0.8973	Pt-CIP7.2
AT1G01430		TBL25	TRICHOME BIREFRINGENCE-LIKE 25...		Potri.014G095800 [exp]	7.48	0.9089

Compare expression of checked genes

Potri.014G185300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.