Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07930 214 / 8e-67 DNA glycosylase superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G189400 [exp] 439 / 6e-158 AT3G07930 215 / 3e-67 DNA glycosylase superfamily protein (.1.2.3) Potri.014G187000 [exp] 413 / 1e-147 AT3G07930 213 / 1e-66 DNA glycosylase superfamily protein (.1.2.3) Potri.014G187766 [exp] 308 / 2e-106 AT3G07930 186 / 3e-56 DNA glycosylase superfamily protein (.1.2.3) Potri.012G037700 [exp] 194 / 1e-61 AT3G07930 215 / 9e-68 DNA glycosylase superfamily protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001994 [exp] 208 / 5e-62 AT3G07930 211 / 9e-61 DNA glycosylase superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0198 [poplar] [flax] HHH PF00730 [poplar] [flax] HhH-GPD HhH-GPD superfamily base excision DNA repair protein
Representative CDS sequence Show only first row Show all	>Potri.014G187300.1 pacid=42763811 polypeptide=Potri.014G187300.1.p locus=Potri.014G187300 ID=Potri.014G187300.1.v4.1 annot-version=v4.1 ATGAAAAGGTTTGCCCTGGAGAAACAAAATCAAATCAAATCAAATCTAATGGAGGGTGGGGCAGAAAAGAAGAGAAGAAGGGAAAGTAAGAAGAAAAAGA AGGATTTCGAGTGTGATGGCAAAGCAGGAGGTGGTCATGGACGGCCGGTAGAAGTCAGTGCTAGTGTGATGGGGTTGTTTTCTGAATTCGCGTTTACAGG TTGTTCAGGGGGGACAGGGCAAGCCTCCTCCTCCGCCTCCTCCACTCGACCTTCCATCAAGAAAGTCGAAAGGGAAGAAGAAGCTCAGAAGAAGAAGAGG AAGAGATCGCCCAGGCTCACTGCTGCTCAAATGCGTGATGTGGCATACCTCAGGAGACGACCCAACAACCGTTGGATTCCGCCCAAATCTCCTCACGAGC TTCTTCAAGAGAATCATTACCATGACCCTTGGAGAGTTCTCGTCATTTGTATGCTATTAAACTGCACATCGGGTGGCCAGGTCAGACCAATTTTAAATGA CTTCTTCACCCTATGTCCTGATGCAAAGACCACCACTAATGTTGACCAGAACGAGATTGCCCAGCTAACACGCAGTTTAGGTTTCAAAAACACGAGGGCT GAGAAGATAAAACGCCTTTCTGAGATTTACTTGCAAGAGGACTGGACCCATGTCACCTTTCTGCCTGGTGTTGGAAAGTATGCCGCTGATGCATATGCAA TATTCTGCACAGGGAGGTGGGACAGGGTGGTGCCAGAGGATCACATGTTGACTAGGTACTGGGAATTCCTTCGCAAGGGTAGATGGATCATAGAATAG
AA sequence Show only first row Show all	>Potri.014G187300.1 pacid=42763811 polypeptide=Potri.014G187300.1.p locus=Potri.014G187300 ID=Potri.014G187300.1.v4.1 annot-version=v4.1 MKRFALEKQNQIKSNLMEGGAEKKRRRESKKKKKDFECDGKAGGGHGRPVEVSASVMGLFSEFAFTGCSGGTGQASSSASSTRPSIKKVEREEEAQKKKR KRSPRLTAAQMRDVAYLRRRPNNRWIPPKSPHELLQENHYHDPWRVLVICMLLNCTSGGQVRPILNDFFTLCPDAKTTTNVDQNEIAQLTRSLGFKNTRA EKIKRLSEIYLQEDWTHVTFLPGVGKYAADAYAIFCTGRWDRVVPEDHMLTRYWEFLRKGRWIIE

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G07930			DNA glycosylase superfamily pr...		Potri.014G187300 [exp]	0	1
AT3G07930			DNA glycosylase superfamily pr...		Potri.014G187000 [exp]	2.00	0.9388
AT3G07930			DNA glycosylase superfamily pr...		Potri.014G189400 [exp]	2.44	0.9196
AT3G07930			DNA glycosylase superfamily pr...		Potri.014G187766 [exp]	2.82	0.8985
AT1G80245			Spc97 / Spc98 family of spindl...		Potri.003G149100 [exp]	7.48	0.7768
AT4G17520			Hyaluronan / mRNA binding fami...		Potri.002G138300 [exp]	12.48	0.7531
AT1G19880			Regulator of chromosome conden...		Potri.002G025600 [exp]	20.97	0.7392
AT4G03180			unknown protein		Potri.014G134700 [exp]	24.89	0.7417
AT1G76890	Trihelix	AT-GT2, GT2	Duplicated homeodomain-like su...		Potri.018G049301 [exp]	29.39	0.6897
AT1G48380		HYP7, RHL1	HYPOCOTYL 7, root hair initiat...		Potri.004G069400 [exp]	31.67	0.7467
					Potri.017G119750 [exp]	51.57	0.7626

Compare expression of checked genes

Potri.014G187300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.