Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07080 479 / 6e-168 EamA-like transporter family (.1) AT4G32140 113 / 2e-27 EamA-like transporter family (.1) AT3G59340 44 / 0.0001 Eukaryotic protein of unknown function (DUF914) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G024700 [exp] 123 / 3e-31 AT4G32140 581 / 0.0 EamA-like transporter family (.1) Potri.006G257000 [exp] 112 / 3e-27 AT4G32140 566 / 0.0 EamA-like transporter family (.1) Potri.006G266400 [exp] 102 / 7e-24 AT4G32140 397 / 6e-137 EamA-like transporter family (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011864 [exp] 429 / 8e-149 AT3G07080 453 / 1e-158 EamA-like transporter family (.1) Lus10022798 [exp] 338 / 3e-114 AT3G07080 342 / 5e-116 EamA-like transporter family (.1) Lus10006194 [exp] 114 / 1e-27 AT4G32140 610 / 0.0 EamA-like transporter family (.1) Lus10041032 [exp] 109 / 3e-26 AT4G32140 607 / 0.0 EamA-like transporter family (.1) Lus10042422 [exp] 100 / 3e-22 AT4G32140 390 / 3e-130 EamA-like transporter family (.1) Lus10026249 [exp] 73 / 1e-13 AT4G32140 320 / 3e-107 EamA-like transporter family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [poplar] [flax] DMT PF06027 [poplar] [flax] SLC35F Solute carrier family 35
Representative CDS sequence Show only first row Show all	>Potri.014G189500.4 pacid=42764699 polypeptide=Potri.014G189500.4.p locus=Potri.014G189500 ID=Potri.014G189500.4.v4.1 annot-version=v4.1 ATGGAGAAAGGTAAGGCTTGGAGATGGGTTAGGGGTTTGGTATACATATTTTCTGTTGCAAATATATGGATAGCAGCTAGTTTTGTGGTTCAATCTGTTG TAGATGCTGGTGTTTCGCCATTTCTGGTCACGTACATTTGCAATTCGTTGTTTGTGATTTACATTCCGATGGTTGAAATTGGACGCTATTTGGAGGATTC TTATGGTAGTTTACTGTTCTGGAGGAATAAAAAGAGGAGCTCTTTGGAAGAACTGAGAGAGTCAGAGCAGGCCATTCTTCTTGGAGATGGTTATTTGGGG GTAAAAGCAGATGAGTTGAATCCATCTGTGATTATGGAAGATGGCATAAGTAGTCTTAATGAGAAAGCTGTTCATTCAAATCTGGATTCTGTATCAAATG AGCTTGAAAGGACCTTGCCTGTGCAAGCAGATGAAGATGTTAATAAAGGAGTTGATGAAAAGGGGCGATGGACACGTGCTAGGGTGGCAAAGGTTAGCCT GCTTATCTGCCCATTTTGGTTTTTGGCACAGCTGACTTTCAATCTATCATTGAAGTATACATCTGTAACATCAAATACCATTTTAAGCAGTGTTTCCAGC CTTTTCACCTTTGTGGTCTCTCTAGTGTTTCTGGGTGAAAAGTTCACTTGGGTGAAGCTTTTAAGTGTTCTTTTCTGCATGGCTGGTACTATAATCGTCA GTTTGGGCGACTCAGAAACTGGTTTAAGTGCAGTTTCTTCGAAACCTCTTCTTGGAGACATTCTAGCTCTGGTCTCAGCTGGCTTGTATGCTGTGTATAT TACACTTATTCGCCTGAAGTTGCCTGACAATGATGGAAAAAGCGGACATGCCAGTATGGCACAGTTCCTTGGATACCTAGGGCTTTTCAACGTCATCATT TTCCTTCCAGTTGCCCTCGTTCTTGATCTCACCAATCTAGAGCCTTTATGTAAGCTGACATGGAAGCAGTTTGGTTTAATTGTTGGCAAAGGTTTGTTGG ATAACGTGCTGAGTGACTATTTATGGGCTAAGGCTGTCCTTTTGACGACCACTACGGTAGCAACAGCTGGTCTTTCAATTCAGGTTCCATTGGCAGCTAT TGTGGATTCCTTTATCGGCAATGCCCCTCGTCTCATGGATGGCCTTGGAGCTTTAGCTGTATTGATTGGCTTTGTTGGAATCAACATTCCTTCTGATGCT TTTAGCAGATCAAAAGGAGCCAGTATTGAACTAGAAAACGAAAATGTCAGATCCACTGATCAAGATCGCGTATCACTCCCCCAAACCACAGTTGGCATCT CATAA
AA sequence Show only first row Show all	>Potri.014G189500.4 pacid=42764699 polypeptide=Potri.014G189500.4.p locus=Potri.014G189500 ID=Potri.014G189500.4.v4.1 annot-version=v4.1 MEKGKAWRWVRGLVYIFSVANIWIAASFVVQSVVDAGVSPFLVTYICNSLFVIYIPMVEIGRYLEDSYGSLLFWRNKKRSSLEELRESEQAILLGDGYLG VKADELNPSVIMEDGISSLNEKAVHSNLDSVSNELERTLPVQADEDVNKGVDEKGRWTRARVAKVSLLICPFWFLAQLTFNLSLKYTSVTSNTILSSVSS LFTFVVSLVFLGEKFTWVKLLSVLFCMAGTIIVSLGDSETGLSAVSSKPLLGDILALVSAGLYAVYITLIRLKLPDNDGKSGHASMAQFLGYLGLFNVII FLPVALVLDLTNLEPLCKLTWKQFGLIVGKGLLDNVLSDYLWAKAVLLTTTTVATAGLSIQVPLAAIVDSFIGNAPRLMDGLGALAVLIGFVGINIPSDA FSRSKGASIELENENVRSTDQDRVSLPQTTVGIS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G07080			EamA-like transporter family (...		Potri.014G189500 [exp]	0	1
AT4G17380		MSH4, ATMSH4	ARABIDOPSIS MUTS HOMOLOG 4, M...		Potri.001G156200 [exp]	4.79	0.8678
AT4G34660			SH3 domain-containing protein ...		Potri.004G161300 [exp]	8.06	0.8508
AT1G75840		ATROP4, ATGP3, ...	RHO-LIKE GTP BINDING PROTEIN 4...		Potri.005G242000 [exp]	12.48	0.8675	Pt-RAC4.2
AT2G21300			ATP binding microtubule motor ...		Potri.004G162800 [exp]	16.34	0.8606
AT2G30910		ARPC1B, ARPC1, ...	actin-related protein C1A (.1....		Potri.014G141700 [exp]	20.00	0.8589	Pt-ARPC1.1
AT1G61240			Protein of unknown function (D...		Potri.011G045300 [exp]	28.14	0.8429
AT1G71790			Subunits of heterodimeric acti...		Potri.005G199600 [exp]	29.52	0.8467
AT1G28490		OSM1, ATSYP61, ...	syntaxin of plants 61 (.1.2)		Potri.004G050800 [exp]	33.49	0.8294	SYP61.1
AT5G01980			RING/U-box superfamily protein...		Potri.016G141600 [exp]	39.10	0.8422
AT1G48880		TBL7	TRICHOME BIREFRINGENCE-LIKE 7 ...		Potri.002G071900 [exp]	41.92	0.8498

Compare expression of checked genes

Potri.014G189500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.