Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	BRCA2.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01630 1132 / 0 BRCA2(V), ATBRCA2(V), BRCA2(V), ATBRCA2(V), BRCA2B, BRCA2(V), ATBRCA2(V), BRCA2(V), ATBRCA2(V), BRC BRCA2-like B (.1) AT4G00020 1090 / 0 BRCA2(IV), BRCA2(IV), BRCA2(IV), BRCA2A, BRCA2(IV), MEE43, EDA20, BRCA2(IV), BRCA2(IV), BRCA2(IV), MATERNAL EFFECT EMBRYO ARREST 43, EMBRYO SAC DEVELOPMENT ARREST 20, BREAST CANCER 2 like 2A (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G125901 [exp] 93 / 2e-22 ND /
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002857 [exp] 1049 / 0 AT4G00020 851 / 0.0 MATERNAL EFFECT EMBRYO ARREST 43, EMBRYO SAC DEVELOPMENT ARREST 20, BREAST CANCER 2 like 2A (.1.2) Lus10000316 [exp] 617 / 0 AT5G01630 540 / 0.0 BRCA2-like B (.1) Lus10017785 [exp] 611 / 0 AT4G00020 532 / 4e-174 MATERNAL EFFECT EMBRYO ARREST 43, EMBRYO SAC DEVELOPMENT ARREST 20, BREAST CANCER 2 like 2A (.1.2) Lus10000317 [exp] 399 / 1e-126 AT5G01630 305 / 7e-92 BRCA2-like B (.1) Lus10017786 [exp] 181 / 7e-51 AT4G00020 129 / 2e-33 MATERNAL EFFECT EMBRYO ARREST 43, EMBRYO SAC DEVELOPMENT ARREST 20, BREAST CANCER 2 like 2A (.1.2) Lus10012228 [exp] 0 / 1 AT5G01630 71 / 1e-10 BRCA2-like B (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00634 [poplar] [flax] BRCA2 BRCA2 repeat CL0021 [poplar] [flax] OB PF09103 [poplar] [flax] BRCA-2_OB1 BRCA2, oligonucleotide/oligosaccharide-binding, domain 1 CL0021 [poplar] [flax] PF09169 [poplar] [flax] BRCA-2_helical BRCA2, helical
Representative CDS sequence Show only first row Show all	>Potri.014G189600.1 pacid=42764609 polypeptide=Potri.014G189600.1.p locus=Potri.014G189600 ID=Potri.014G189600.1.v4.1 annot-version=v4.1 ATGTCGTCGTGGAAAATATTCTCCGACTCCGGAAACAATTTCCGATGGGAAGTCACCGGCCAAATCATCCACACGAAACCCGAACCTAAACAAAGCGGAG CCCTAATCCCCCCTTCCAGCTCCAGAACTCACCTCCCTTCCATGGCCGATCTCTTACTCCAAGGATGTCCGAAACTTCTAGAGAACGGAAATGCACCGAT TTTCCGCACAGGATCAGGGAAATCGGTTGCGTTAAAACAGTCTTCGATTGCGAAAGCGTTATCTGTCCTCAGAGACGATGATGATGCAGGTGAAGCTTGT GGGGGAGAGAATGAACTTAGTTTTTCGAAGCTTCGCAAGAAAGGGAATGAAGATAATGGAAATGCACCAATTTTCCATACAGGATCAGGGAAATCGGTTG TACTGAAACAATCTTCGATTGCAAAAGCGTTGTCTGTTCTTGGTGATGATGATGGATATTCTGGCAATCCAGGTGAAGTGCATGGTAGAAATAATGAACG TTGTTTCTCTAATTCTCTTTTCCATACTGGATCTGGGAAATCAGTTGATATATCTTCTGCCGGTTTGGTTAGAGCGAAGAGGTTGTTGGGAATGGAGGAA GAAAATTATAGTTCTAATTTTCAAGGATTTAAATGTCCAAGGAAATCTTCCACTGTCAATGAGCAATTTGGGTGGCAGGATGTAATGCATTCAGGGACGA AAGTCAGTATGAAAAATAATGGGGTTATTGGTGATGATTTGCCAGCTCCTAGGTCTTCTTTAGTTTCTAAGACTGTTATTTTAGAAAGTGAATTGACGAA GGAGGTCAATACAAACTTGTTGGAACCTGAAATACAAAAACCACCTCCAATTAAATTCCATACTGCCGGTGGAAGATCCCTATCTGTTTCCAGTGAGGCA TTGAAACGTGCAAGGAGTCTTCTTGGTGACCCAGACCTAGGAACTTTCTTAAATGAGGGAGATGCAGTTGATCAGGGCCTCTCAGTTTTTGAAGGTAGTG GATTTGGTGATGCTTCATCAAACAAGGAAAATGTTTTTTACTCTGCTTTTACCCATCCTAGAGCCTCAAGTAAACATATCTCAAAAACTTTCATTTCACC TCTTAAATCATCTGCAAACTATGTCCAGTCATCTATTAATCCAAAAAATGTTATTTCGGGGAGTAACTTGATAAAGAAATTTGATGCTGTTCACAATGAC AGCATCTCCAAAGTTAATAACAACGCGACTTATGTACAGAAGCCTGTAAGGAATGGGCTCTGTACATCTGCTACAATGGTTGCTAATTCTCTGGATAATA TTACTGGCTCAAGGATGAATTCACTTCAAAGGACTAGCTCCAGGATGATACCACTTCAAAAGTCATTGTGTGCGCCGTTGCCTGATATTTCAAATACAAT TGGCACAGCTTACTCAAATAACGGACAAGCTAATGGAGAGAAGAGGAAACTTGGAAGGGGAATTTCTATTTCTCCATTTAAAAAGCCCCGCAGTTCCAAA TTCACCACCCCTTTGAACAGGAATGTCTCATCTGTTCCCAGTGGTTTATCTACTGTATCATATGAAAGTTCCAGCTGTAGAAAAAAAGTTTCCACTAGAT ATCCTTTCCAGGTTCCTAGAATGTATATCAAGGAATACTTTGGAGGGCATTTATCAGATAAGCGCCTGTCGGAGTACTTTACAGATCAAGTAAGACAGAT CAAGTCAAATAATGCAGATAAGTACATGTTTTGCGATGAATCTGGCCGAGATAGCATTGGAGCTGAAGCATTCTATGACATGTTGCTTCAGTCTGGAGCT TTGTCACAATATGCTTCTAAAGAGTGGGTTATAAATCATTACAAGTGGATAGTTTGGAAACTTGCATGTTATGAGAGATGCTGCCCAGAAAAATCTGCTG CAAAATTTTTGTCAGTCTCCAATGTGCTTGAGGAATTGAAGTACAGATACGAGAGAGAAGTAAATCATGGCCATCGATCTGCAATTAAGAGAATTCTGGA AGGGGACGCACCACCTTCTTCAATGATGGTTCTATGCATTTCTTCCATCTACTTCGGTTGTGAACCAAAGGTAGAGGTTCCTTCAGTGGCATTAGACGGG GCTGAGCATAGTAATGCTGCAAAACTGGAACTGACCGATGGGTGGTATTCAGTGGATGCGCTTCTGGATATATCACTTTCAATGCATCTGGATGCTGGGA AACTGTTTGTGGGACAGAAACTTCGAATATGGGGAGCAGGATTATGTGGTTGGGCTGGTCCTGTGTCATCCTTCGAGGCATTGAAGACTGTTAGTTTGTC ATTGCATATAAATGGGACTTATAGAGCTCACTGGGCTGATCGAATGGGATTTTGTAAGGGAATTGGTGCTCCTTTGGCTTTTAGGTGCATAAAGAGTAAT GGCGGTCCTGTCCCTCGGGTGTTAGTTGGAGTCACACGGGTTTACCCTGTTCTATACAAGGATAAATTAAGTAATGGCAGCAGAACTATTGTGAGATCAG AGAGAATGGAGGCTAAACTGGTGCAATTGAATAACCAGAGGCGTTCAGTTATTATAGAGGGTATTGTTTCTGAGTTTCAAAGAGGGATGAAAAGTTCTAA CATATATACTGATATTGATAGTGAAGAAGGAGCAAAAATATTTAAGATTCTTGAGACATCAGCTGAACCAGAAGTCCTAATGGCAGAGATGAGTCCACAG CAACTAGCATCATTTGCCTCTTATCAATCAAAACTAGAGGCGACAAGGCAACTGGACATGGAGAAAGCAATTGGGAAAGCTTTACAAGATGCTGGCTTAG GGGAGAGAGAAGTGACCCCATTTATTAGGGTCAGGGTAGTTGGGTTAACTAATTATCAAGAAAAGGGCGCCCGCGCCCCTAAAGAAGGCTTAATAACAAT TTGGAACCCGACAGAGAAGCAGAAAAGTGATCTTGTCGAGGGGCAGGCTTATGCTGTAGCAGGACTATTACCCGTGAGTTCTGATTCAAATACACTTTAC TTGCAAGCAAGAGGATCTACAACCAAATGGCAACCTTTATCTTCCCTGGCAATGCAACAGTTTCAGCCATTTTTCAGCCCTCGAGCACCAGTATTATTGT CAAATTTGGGTGAAGTTCCTCTTTGTCGTGAATTTGACATTGCTGCACTTGTGTTGCACGTGGGAGATATTTATACAGCTGCTCAGCAAAAGAAACAGTG GGTGTTTGTGACTGATAGCTCCATTTCTAGATTTGATTCAGAGGATACGTCAAAGTCCTTACTGGCCATCAGCTTCTGCTCACCATACATGGATAACGAT TCATTTACACCAATCAACTACAATCTTGCTGGATCCACAATTGGCTTGTGTAATCTCATCAAGAGAGCAAAGGACCAAACATATCATCTCTCGATAGCTG AAGCAACAGAAAATTCGACCTATTCTTTGAATTTTGATTCCTCCAATTTTTTGCACCTTAAAAATGCTGCTGCCTCTACTCAAAGCTGGGCCAAGACCTC TACCTCGATTATTAATAAACTTAAGGAGAGGGTTTTATTTATTATTGGTGATTGA
AA sequence Show only first row Show all	>Potri.014G189600.1 pacid=42764609 polypeptide=Potri.014G189600.1.p locus=Potri.014G189600 ID=Potri.014G189600.1.v4.1 annot-version=v4.1 MSSWKIFSDSGNNFRWEVTGQIIHTKPEPKQSGALIPPSSSRTHLPSMADLLLQGCPKLLENGNAPIFRTGSGKSVALKQSSIAKALSVLRDDDDAGEAC GGENELSFSKLRKKGNEDNGNAPIFHTGSGKSVVLKQSSIAKALSVLGDDDGYSGNPGEVHGRNNERCFSNSLFHTGSGKSVDISSAGLVRAKRLLGMEE ENYSSNFQGFKCPRKSSTVNEQFGWQDVMHSGTKVSMKNNGVIGDDLPAPRSSLVSKTVILESELTKEVNTNLLEPEIQKPPPIKFHTAGGRSLSVSSEA LKRARSLLGDPDLGTFLNEGDAVDQGLSVFEGSGFGDASSNKENVFYSAFTHPRASSKHISKTFISPLKSSANYVQSSINPKNVISGSNLIKKFDAVHND SISKVNNNATYVQKPVRNGLCTSATMVANSLDNITGSRMNSLQRTSSRMIPLQKSLCAPLPDISNTIGTAYSNNGQANGEKRKLGRGISISPFKKPRSSK FTTPLNRNVSSVPSGLSTVSYESSSCRKKVSTRYPFQVPRMYIKEYFGGHLSDKRLSEYFTDQVRQIKSNNADKYMFCDESGRDSIGAEAFYDMLLQSGA LSQYASKEWVINHYKWIVWKLACYERCCPEKSAAKFLSVSNVLEELKYRYEREVNHGHRSAIKRILEGDAPPSSMMVLCISSIYFGCEPKVEVPSVALDG AEHSNAAKLELTDGWYSVDALLDISLSMHLDAGKLFVGQKLRIWGAGLCGWAGPVSSFEALKTVSLSLHINGTYRAHWADRMGFCKGIGAPLAFRCIKSN GGPVPRVLVGVTRVYPVLYKDKLSNGSRTIVRSERMEAKLVQLNNQRRSVIIEGIVSEFQRGMKSSNIYTDIDSEEGAKIFKILETSAEPEVLMAEMSPQ QLASFASYQSKLEATRQLDMEKAIGKALQDAGLGEREVTPFIRVRVVGLTNYQEKGARAPKEGLITIWNPTEKQKSDLVEGQAYAVAGLLPVSSDSNTLY LQARGSTTKWQPLSSLAMQQFQPFFSPRAPVLLSNLGEVPLCREFDIAALVLHVGDIYTAAQQKKQWVFVTDSSISRFDSEDTSKSLLAISFCSPYMDND SFTPINYNLAGSTIGLCNLIKRAKDQTYHLSIAEATENSTYSLNFDSSNFLHLKNAAASTQSWAKTSTSIINKLKERVLFIIGD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G01630		BRCA2(V), ATBRC...	BRCA2-like B (.1)		Potri.014G189600 [exp]	0	1	BRCA2.1
AT4G01270			RING/U-box superfamily protein...		Potri.014G089800 [exp]	1.00	0.8711
AT1G26330			DNA binding (.1.2)		Potri.008G097700 [exp]	3.74	0.8524
AT2G13620		ATCHX15	CATION/H+ EXCHANGER 15, cation...		Potri.010G189100 [exp]	14.07	0.7363
AT4G16970			Protein kinase superfamily pro...		Potri.001G151900 [exp]	22.44	0.8354
AT4G22970		RSW4, AESP	RADIALLY SWOLLEN 4, homolog of...		Potri.003G021700 [exp]	23.23	0.7764
AT1G27880			DEAD/DEAH box RNA helicase fam...		Potri.010G056500 [exp]	25.21	0.8163
AT1G07270			Cell division control, Cdc6 (....		Potri.001G250200 [exp]	25.98	0.8231
AT2G07690		MCM5	MINICHROMOSOME MAINTENANCE 5, ...		Potri.006G188700 [exp]	26.07	0.8234
AT1G08260		ESD7, EMB142, E...	TILTED 1, EARLY IN SHORT DAYS ...		Potri.004G185700 [exp]	33.04	0.7577
AT5G52910		ATIM	timeless family protein (.1)		Potri.015G024300 [exp]	37.20	0.8094

Compare expression of checked genes

Potri.014G189600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.