Plant FIBer expression Database

Potri.014G189900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G24870 1237 / 0 Helicase/SANT-associated, DNA binding protein (.1.2)
AT3G24880 1224 / 0 Helicase/SANT-associated, DNA binding protein (.1)
AT3G12810 64 / 2e-09 CHR13, SRCAP, PIE1 PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1, SNF2 domain-containing protein / helicase domain-containing protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G243400
[exp]
1996 / 0 AT3G24870 1017 / 0.0 Helicase/SANT-associated, DNA binding protein (.1.2)
Potri.002G243350
[exp]
692 / 0 AT3G24870 184 / 6e-48 Helicase/SANT-associated, DNA binding protein (.1.2)
Potri.001G207700
[exp]
65 / 6e-10 AT3G12810 2199 / 0.0 PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1, SNF2 domain-containing protein / helicase domain-containing protein (.1)
Potri.003G022100
[exp]
59 / 4e-08 AT3G12810 1824 / 0.0 PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1, SNF2 domain-containing protein / helicase domain-containing protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10011850
[exp]
1401 / 0 AT3G24870 1216 / 0.0 Helicase/SANT-associated, DNA binding protein (.1.2)
Lus10022788
[exp]
1325 / 0 AT3G24870 1202 / 0.0 Helicase/SANT-associated, DNA binding protein (.1.2)
Lus10007174
[exp]
63 / 7e-10 AT3G12810 281 / 2e-85 PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1, SNF2 domain-containing protein / helicase domain-containing protein (.1)
Lus10002974
[exp]
63 / 3e-09 AT3G12810 1071 / 0.0 PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1, SNF2 domain-containing protein / helicase domain-containing protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0123 HTH PF13921 Myb_DNA-bind_6 Myb-like DNA-binding domain
Representative CDS sequence
>Potri.014G189900.10 pacid=42764469 polypeptide=Potri.014G189900.10.p locus=Potri.014G189900 ID=Potri.014G189900.10.v4.1 annot-version=v4.1
ATGCATGGATGTGGTCCAGGGTCTGCTCCCCTAGTAAATGCTGAAGTTGATTCCATGGGTGGGGTTGTTGATGGCGGAGTTGGTATTGATATAAAAACCT
CTCCACGGCAAGCAGCAATTGAGAAGGCTCATGCAGAACTTAGACAAGAGTATGATGTTCGTGAGGAACGGAGAAGGGAGCTAGAATTTCTTGAGAAAGG
TGGCAATCCTTTGGATTTTAAATTTGTGAATGCAGCTTCGGTTAGTGTCCAGTCTACTTCACTCACGGATCATCATGTTGAACAGTTTGTTACTAGTGAA
GCAAAAGGCAATTTTCCACTGACAACATCACTTCACGGGGATTCTGTAGAAAGTAGTGGGAGACCAGGGGCTACTGCAGTTTGTGAGCCCAATAGTGCTG
ACAATTTTGATGGTGAAAATGAGTTACTTGAAGTTGAAAGGAAACCTACAAATCCTAGTAGAAGGAATAAGGTGACTCAATCAGAGCAGTCTTCACAGAT
GGATGGGACTCATAATGCCAAGGAGTCTGAAGATTCTGCTATTTTTCGGCCATATGCTCGAAGGAATAGGTCCAGACCAAACCGTGATAGTGCTCGATCA
GGTTCAACTGATATTGTTCAGAGTTCAGGTGGTCATGGATCTTACTTACCAGTTCGAGGGGGTGCAAGGGATGTGAAGGGGTTGGTAACTGAAACAGACA
ATCATAAAGACCAGAATATCACTTTAGTCTCTAACCCAAAGTCTCCAGCTTCAAATGGTATGGTTTCCCAGATTGAGGCTTCCAATACCCATTCAAACAT
GGAACTTGATTGTGTGCAGGCACTGAAAACAGTTGCTAACCTGCCTGAATATAGGCTGGATGTTACAGAGTCCAATGTCTTGAGGGATAACCTGCATGAT
CAACCTTCAGAAGCTGATACTGAGAATGCTTCCAAGGAATGTGATCATGATGGAGGAAGAGAGCAGGTTATTTCTGCTGGTCCTGAAGGTCTACCTTGTG
CTGAATCAACAAAGACTGAGAATGAAACTGGTCCGGGTCTGCTTAACGGTTTTAGTGACTTGAAAAAAGATGGAGATGAAGGTCAAAATGGTAACACAGC
AATGGGAACTAAAGGATTCGATTCAGAGTCCTCGTGCACCCAAAATAGCATAAGCTTGGATGTAAACAATGAAAGTGATTTGTGTGCCAATTACAGAAAT
GATGATACCAATGAAATACTTTTTAAAGAACTATCAAAACATGAAGGAACACAAAGTTTACTATCAGGTAATATGGGAAATGAAAAGAAAGAGACTAAGT
CTATTGAACATGTTACTGCCATCAATGATGGTTCTGTGCATCAAAACTACTCTATTGAACATGTTACTGCCATCAATGACGGTTCTGTGCATCAAAACTA
CTCTGGCAATGATTCTACTGTCAAAAGTGAGGAAGAGATGAGAAGTTGTTCTCACCCTCAAAATGAGGTGAAGTGTCATAATCTTGAAGGGGCGGAACAA
AATGACCATGTAGCACCTGAGGCTGATACAAAGGCGGGCAAGATGTTGGCTGACGGTTCCAATTCCAACAGAGAAAACATTTACCCCAGTGGTCCCCAGG
GCTATAATGATCCATCTATTCAAGAGCTTCCCCACCTTATTTTGTTAGAGAAAAAATCTTCTGCGGCCCTTGACCCACAATCTTGTTCTAATACACAATT
GAAATTGGTAGACAAGGCTCATGAAGATTCTGTTTTGGAAGAGGCACGGATTATCGAGGCTAAGCGGAAGAGGATTGCTGAATTATCTGTTGGAACTGTG
CCCTCAAAGAGTAACTGGAAATCTCACTGGGATTTTGTCCTTGAAGAAATGGCATGGTTGGCAAATGATTTCGCACAGGAGCGTCTCTGGAAGATGACTG
CTGCTGCTCAAATATGTCGCCGTGTTGCTTTTACTTCCAGATTGAGAGTTGAGGAACGAAATCAGCATCTGAAGCTAAAAAAAGTTGCTTATAGTCTGGC
TAAGGCTGTCATGCAGTTCTGGCACTCAATGGAGGTGTATCTAAGTAACAATTGTCAAAGTTTTGGTTCAAAGAATGGCAAGCATGAGTCGATAATCTTT
TATGGGAATGAATTTTCTGTCAACAAGTATGGAGAAATTGATAAGGTGGCATGCAAAGAGTTAGAGATACAAAAGCCTGTCAAAAACATTGCCCATGCCA
TTCATGGATATGCTTTAAGATTTTTGAAATATAACAGCTCGCCAGTTCCTTCCCTTCAAGAAGTACCAGCAACTCCTGACAGAATAGCTGATTTAGGCAT
GATGGACATTTCATGGGATGATCACCTCACGGAAGAAAGCCTGTTCTATGCAGTTCCCTCAGCTGCCATGGCAATGTACAGATTGTCCATTGAATCTCAT
ATCATGCAAAGTGAGAAAACTCACAATAACATGCAGGATGAGGTTGATACATCTATGTATGACACTCCAGCAGACTTTGGATGTCATGACAATGCATATG
ATGAGGAAGAAGAAACAAGTGCCTACTATATGCATGGCGTCTTTGAAGGTAGCAAGCAAGGAAAACATGACCAGAAGAAATGGAAAAGCTTCACAAAGTC
ACCTTCTGCAAGATCATATGATCTGGCAACTGATTCACCTTATGGACACTGCACCACTGGGCCTCAACAAAATGTATTGAAGGGGAAAAGACCTGCTAAT
AATCTTAACACTGGTTCAATTCCAACAAAACGCATGCGTACTGCTTCTAGGCAGAGGTTTACAAGTCCTTTTACTGCTGGAACCACTGGGGTTCTACCCC
AGGCTCCAATGAAGACAGATGCGTCAAGTGGAGATACTAATTCTTTTCAGGATGACCAGAGTACTTTGCATGGCGGATCACAAATACAAAAAAGCGTGGA
GGTCGAGTCAGCTTCAGATTTTGAAAGGCAGTTACCATATGACTATGCCGAGACGTCAGCAAAACTGAAGAAGAAGAAGAAAGCAAAACATCTGGGTTCT
GCTTATGAGCAGGGCTGGCAGCTGGATTCCACTGTTCATAATGATCAGAGGGATAATTTCAGAAAGAGATCAGAGAGTCATCATTTTGACTCTAATGGAA
CTAGTGGTTTATATGAGCAACATAGTGCAAAGAAGCCAAAGATAATGAAGCAATTGCTAGATAATACTTTTGACAGCATGGCGCAAATGACTGGGTCCGT
CCCATCCCCAGCCCTTTCCCAGATGAGTAAGATGTCAAACACAAATAGATTCATCAAATTGATTGGTGGCAGGGAACGGGGAAGAAAAAATAAATCAATG
AAGATGTCTGCTGGGCAGCCAGGTTTTGGAACTCCTTGGTCACTTTTTGAAGACCAGGCTCTTGTTGTTCTTGTGCATGACATGGGTCCTAATTGGGATC
TTATAAGTGATGCTATCAACAGCACTGTTCAATTCAAGTGTATATTTCGCAAGCCTAAAGAATGCAAAGAACGCCACAAAATCTTAATGGACAAGGGTGC
TGGTGATGGGGCTGATAGTGCTGAGGATTCTGGATCTTCTCAATCCTACCCGTCAACTTTACCTGGCATTCCAAAGGGCAGTGCCAGACAGTTGTTTCAA
CATTTGCAAGGGCCAATGCAAGAGGATACCCTGAAGTCTCATTTTGAGAAAATTATCATGATTGGGAAGAAGTATCTTTACAAAAGGAGTCAGAATGAAA
ACCAGGATCCTAAGCAAATAGCAGCAATTCACAATTCTCATGGTATTGCTCTTTCCCAAGTTTGCCCAAACTTAAATGGAGGTGTCCTAATGCCCCTTGA
TCTCTGTGATCCAAGTGCTTCAAATCCAGATGTTCTTCCCATTGTGTATCAAGGTTCACATGCTAGCAATTTGGTAATGACAAATCAAGGTGCTATAGCA
TCAATGCTTCCTACTTCTGGTGCAAGCTCTTCTCTGCAAGGATCTTCTGGTGTGGTTCTTGGCAGTAACTCATCATCACCATTTGGTCCCCTTAATGCAC
CTCTTAGAGATGGTAGATACAATGTTCCAAGGACATCCTTACCAGTTGACGAGCAGCAAAGAATGCAACACTGCCATCAAATGTTATCTAATAGAAACTT
GCAGCAGTCTAACTTGTCTGTTTCTGGGGCTCTTTCTGGAGCTGATCGTGGTGTTCACATGCTACCAGGTGGAAATGGTATGGGCATAATGCCAGGGATG
AACAGAAGCATGCCACTCCCAAGGCCAGGATTTCAAGGAATAGCCTCACCATCAATGCTGAATCCAGGCAATTTGCTTTCTCCCAATATGGTTGGGATGC
CAAGCCCTGTAAATATGCACTCTGGAACTGGTTCTGGTCAAGGGAACTCGATGAGACCTCGCGAGGCTATGCATTATATGAGGCTTGGCCATAACCCTGA
GCATCAAAGACAAATGAAGGTACCAGAGCTTCAGATGCAGGCAACACAAGGGAACAACCAAGGAATTCCTGCCTTCAATGGGTTGAGTTCTGCTTTTGCT
AATCAGATGGCCACTACGCCAGTGCAGACATATCCAGGCCATCCCCAGCATCAGCATCAAATATCCACACAACAGTCCAATATGTTGAGCAATCCTCATC
ATCCCAATCTTCATGGCTCCAACCATACTACAGTTTCACAGCAGCAAACAAATGCAATGCACCATGCTAAAGAAAGGCAAATGCAGCAGCGGCTTCTCCA
GCAGCAGCAGCTTGCTGCATCTAGTGCTTTGGTGCCCCATGCCCAACATCAATCCCAACTTCCCATAACATCATCTATGCAAAGCAGTTCTCAGATTCCA
TCACCAACTGCATCGCAGCCATTGTCACCACCCCCTATAACTCCACCTTCCCCAATGACTCCCATTTCAATGCAGCAGCAACAGCAGCAGAAACATAACT
TGCCACATCATGCTGTCAGCTGGAATCCCCAAACTGGTTCCAGCGGGTTGACCAATCAGATGGGAAAGCAACGCCAATGGCAGCCACAGCAATTCCAACA
ATCTGCTCGGCATCACCCTCAACAACGACAACACTCACAGTCTCCACAGCAGGCTAAACTCTTAAAGGGGATGGGAAGAGGGAACATGGTGGTGCACCAG
AACCTCTTGATTGATCATTCTCCTTTGAATGGCCTTTCTGTTCCTCCAGGAAACCAAGGTGCAGAGAAAGGAGAGCAAATCATGCACTTGATGCAGGGTC
CAGGCTTGTATTCTGGGGCTGGGTTAAGTCCAATTCAGTCGTCTAAACCACTGGTTTCTTCACAATCCCTGAACCATTCTCAGCCACAGCAAAAGTTATA
TTCTGGCTCAACAAACCCTTCGTCAAAACCACTTCAGCAAATGCCTTCCCATTTGGATAATAGTGTTCAAGGCCATGTTCAACCAGTACTCTCTGGTCAA
ACACTAACGGCCACTCACCAAAACACTCCAGTTATGGTCCCTAATCATCAGCATCTGCAACCACATCTACAGCCACACCAGAAGCAGGTTAGTCAACCTC
AACCAGCTGTTCAGAGAATGCTTCAAAAGAATCGGCAGGTGAATTCTGATCTGGCAACTAAGCCTCAAAATGATCAGAGTCATACTGATCAGCAAACTCC
AAACATCTCCCGGACAGGAACAAGAACATCCACAATGACGACCCAGGGCTGTAATGATACAGCTAATGTGGCACCAGTTGTCTCTTCTGCCTCTGCGATA
CAGTGGAAATCATCAGAATCACCCTTGCATGATTCTGGCATGGAAAATTCAGCCTCTCAGAAAGGTCCTATTGGTAGCCCAGCTCTTACAAGTGCAACTG
GGAGTGAGCCAGCTGTCAGCCTAGGTTCAGTCCACAGGCAGTTATCAGGAGGTTTGCCCATGAATGGCCATAATGGTGGAGCACAGTGGCAGCACAAACA
ACCACAAAAATCAACAGCCTTACCACCCCCATGCCAACAACTGTTGCAGCCACAAGAACAAAAGTCACAGCAAGAACAACAACACTCACCTCAACAGCTG
CCACCACAGCAGCCGTCACAGCTGTAG
AA sequence
>Potri.014G189900.10 pacid=42764469 polypeptide=Potri.014G189900.10.p locus=Potri.014G189900 ID=Potri.014G189900.10.v4.1 annot-version=v4.1
MHGCGPGSAPLVNAEVDSMGGVVDGGVGIDIKTSPRQAAIEKAHAELRQEYDVREERRRELEFLEKGGNPLDFKFVNAASVSVQSTSLTDHHVEQFVTSE
AKGNFPLTTSLHGDSVESSGRPGATAVCEPNSADNFDGENELLEVERKPTNPSRRNKVTQSEQSSQMDGTHNAKESEDSAIFRPYARRNRSRPNRDSARS
GSTDIVQSSGGHGSYLPVRGGARDVKGLVTETDNHKDQNITLVSNPKSPASNGMVSQIEASNTHSNMELDCVQALKTVANLPEYRLDVTESNVLRDNLHD
QPSEADTENASKECDHDGGREQVISAGPEGLPCAESTKTENETGPGLLNGFSDLKKDGDEGQNGNTAMGTKGFDSESSCTQNSISLDVNNESDLCANYRN
DDTNEILFKELSKHEGTQSLLSGNMGNEKKETKSIEHVTAINDGSVHQNYSIEHVTAINDGSVHQNYSGNDSTVKSEEEMRSCSHPQNEVKCHNLEGAEQ
NDHVAPEADTKAGKMLADGSNSNRENIYPSGPQGYNDPSIQELPHLILLEKKSSAALDPQSCSNTQLKLVDKAHEDSVLEEARIIEAKRKRIAELSVGTV
PSKSNWKSHWDFVLEEMAWLANDFAQERLWKMTAAAQICRRVAFTSRLRVEERNQHLKLKKVAYSLAKAVMQFWHSMEVYLSNNCQSFGSKNGKHESIIF
YGNEFSVNKYGEIDKVACKELEIQKPVKNIAHAIHGYALRFLKYNSSPVPSLQEVPATPDRIADLGMMDISWDDHLTEESLFYAVPSAAMAMYRLSIESH
IMQSEKTHNNMQDEVDTSMYDTPADFGCHDNAYDEEEETSAYYMHGVFEGSKQGKHDQKKWKSFTKSPSARSYDLATDSPYGHCTTGPQQNVLKGKRPAN
NLNTGSIPTKRMRTASRQRFTSPFTAGTTGVLPQAPMKTDASSGDTNSFQDDQSTLHGGSQIQKSVEVESASDFERQLPYDYAETSAKLKKKKKAKHLGS
AYEQGWQLDSTVHNDQRDNFRKRSESHHFDSNGTSGLYEQHSAKKPKIMKQLLDNTFDSMAQMTGSVPSPALSQMSKMSNTNRFIKLIGGRERGRKNKSM
KMSAGQPGFGTPWSLFEDQALVVLVHDMGPNWDLISDAINSTVQFKCIFRKPKECKERHKILMDKGAGDGADSAEDSGSSQSYPSTLPGIPKGSARQLFQ
HLQGPMQEDTLKSHFEKIIMIGKKYLYKRSQNENQDPKQIAAIHNSHGIALSQVCPNLNGGVLMPLDLCDPSASNPDVLPIVYQGSHASNLVMTNQGAIA
SMLPTSGASSSLQGSSGVVLGSNSSSPFGPLNAPLRDGRYNVPRTSLPVDEQQRMQHCHQMLSNRNLQQSNLSVSGALSGADRGVHMLPGGNGMGIMPGM
NRSMPLPRPGFQGIASPSMLNPGNLLSPNMVGMPSPVNMHSGTGSGQGNSMRPREAMHYMRLGHNPEHQRQMKVPELQMQATQGNNQGIPAFNGLSSAFA
NQMATTPVQTYPGHPQHQHQISTQQSNMLSNPHHPNLHGSNHTTVSQQQTNAMHHAKERQMQQRLLQQQQLAASSALVPHAQHQSQLPITSSMQSSSQIP
SPTASQPLSPPPITPPSPMTPISMQQQQQQKHNLPHHAVSWNPQTGSSGLTNQMGKQRQWQPQQFQQSARHHPQQRQHSQSPQQAKLLKGMGRGNMVVHQ
NLLIDHSPLNGLSVPPGNQGAEKGEQIMHLMQGPGLYSGAGLSPIQSSKPLVSSQSLNHSQPQQKLYSGSTNPSSKPLQQMPSHLDNSVQGHVQPVLSGQ
TLTATHQNTPVMVPNHQHLQPHLQPHQKQVSQPQPAVQRMLQKNRQVNSDLATKPQNDQSHTDQQTPNISRTGTRTSTMTTQGCNDTANVAPVVSSASAI
QWKSSESPLHDSGMENSASQKGPIGSPALTSATGSEPAVSLGSVHRQLSGGLPMNGHNGGAQWQHKQPQKSTALPPPCQQLLQPQEQKSQQEQQHSPQQL
PPQQPSQL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G24870 Helicase/SANT-associated, DNA ... Potri.014G189900
[exp]
0 1
AT1G77300 ASHH2, CCR1, SD... LAZARUS 2, CAROTENOID CHLOROPL... Potri.005G182100
[exp]
1.41 0.9078
AT1G10320 C3HZnF Zinc finger C-x8-C-x5-C-x3-H t... Potri.004G228600
[exp]
1.73 0.9120
AT3G09850 D111/G-patch domain-containing... Potri.006G189501
[exp]
3.74 0.8865
AT2G46020 CHA2, ATBRM, CH... CHROMATIN REMODELING 2, ARABID... Potri.002G160900
[exp]
4.89 0.8918
AT1G79280 AtTPR, NUA TRANSLOCATED PROMOTER REGION, ... Potri.008G080900
[exp]
5.29 0.8912
AT5G53430 SET29, ATX5, SD... SET domain group 29 (.1) Potri.015G014300
[exp]
6.48 0.8666 SDG29.1
AT3G50370 unknown protein Potri.007G043300
[exp]
6.70 0.8771
AT1G28420 HD HB-1 homeobox-1 (.1) Potri.011G057700
[exp]
7.07 0.8751
AT1G79000 ATHAC1, ATHPCAT... ARABIDOPSIS THALIANA P300/CBP ... Potri.014G000500
[exp]
7.07 0.8406 Pt-HAC1.3
AT1G32750 GTD1, TAF1, HAF... TBP-ASSOCIATED FACTOR 1, HISTO... Potri.007G113300
[exp]
8.12 0.8867 HAF902

Potri.014G189900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.