Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48720 226 / 2e-73 XRI1, XRI x-ray induced transcript 1 (.1.2) AT2G01990 67 / 4e-13 unknown protein AT1G14630 63 / 1e-11 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G244000 [exp] 430 / 1e-153 AT5G48720 281 / 2e-94 x-ray induced transcript 1 (.1.2) Potri.008G140900 [exp] 76 / 1e-15 AT2G01990 148 / 3e-43 unknown protein Potri.010G100700 [exp] 75 / 1e-15 AT1G14630 166 / 1e-50 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038181 [exp] 238 / 3e-77 AT5G48720 253 / 4e-83 x-ray induced transcript 1 (.1.2) Lus10025920 [exp] 215 / 5e-69 AT5G48720 237 / 2e-77 x-ray induced transcript 1 (.1.2) Lus10013793 [exp] 71 / 1e-13 AT2G01990 118 / 1e-31 unknown protein Lus10039139 [exp] 69 / 4e-13 AT1G14630 120 / 3e-32 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.014G190000.1 pacid=42763354 polypeptide=Potri.014G190000.1.p locus=Potri.014G190000 ID=Potri.014G190000.1.v4.1 annot-version=v4.1 ATGGATTATAACAATGACAATGGCAATGGGGAACATCGGGGTTGGCAACGTGACGAGCACTATCTTCAAAAACATTTCAATGGTGATATATCTCAATGTT TATGGGATGAAGTGACTCCGAATGGAGAATATCTTTCCTACATGCTTGATGAGACAACTCCGGTTAAGGCTTATGGGGATTTGGCTTACCATGTTGATCA TGATGCTAACATGAACAAGGAACATGAAGAATGGAGGAGGACTTGCTTGCAATTAAAAAAGTGTCGGCTACAGTTTGACACTCAATTAGAAGATTCCCCC TTTTGTGATAAAGAAATAACTCCTATATTCTTAAAATCAAATGAGACAAAAGAGTCACTTGAAGAAGTTTTCCCACAAGCATCACAATGGGATTCTGGTT ATCAAGATATTTCTGCCTCCAGTTACAATGGCCTGGATCAGTCATCTGAGCGGTGGATTGCAGACTGTTTTAATGACTCGGAGATGCATTTTAGTCCCAA TGATATGAATCTCCCTAGAGCATTTGATATTCAAATTGATATTTCAGGTATGAAGTCCTTCATCCAGACACCCACTAAGTTAGCTATTTATGTTGCCTAT CCATTTGCTTTTATCAAACCTTGTGGGGTTCACGGAGATGTCACTTTGAATGAAATAAACCAGCGGATCCGCACTCCACCATCGAAAGCAAAGCTAAGGG ATGAAGAACCCGTTGTTTACCCAATGTCCGCTTTTTCCGGGAAGCCTGTTGTTGGCAAAACTAAAATTCGCACAGAAGGAGGGAAAGGAAGCATCACAAT TATGAGAACTAAAGGCTAA
AA sequence Show only first row Show all	>Potri.014G190000.1 pacid=42763354 polypeptide=Potri.014G190000.1.p locus=Potri.014G190000 ID=Potri.014G190000.1.v4.1 annot-version=v4.1 MDYNNDNGNGEHRGWQRDEHYLQKHFNGDISQCLWDEVTPNGEYLSYMLDETTPVKAYGDLAYHVDHDANMNKEHEEWRRTCLQLKKCRLQFDTQLEDSP FCDKEITPIFLKSNETKESLEEVFPQASQWDSGYQDISASSYNGLDQSSERWIADCFNDSEMHFSPNDMNLPRAFDIQIDISGMKSFIQTPTKLAIYVAY PFAFIKPCGVHGDVTLNEINQRIRTPPSKAKLRDEEPVVYPMSAFSGKPVVGKTKIRTEGGKGSITIMRTKG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G48720		XRI1, XRI	x-ray induced transcript 1 (.1...		Potri.014G190000 [exp]	0	1
AT3G45850			P-loop containing nucleoside t...		Potri.014G170950 [exp]	5.19	0.8310
AT2G37980			O-fucosyltransferase family pr...		Potri.006G095300 [exp]	7.41	0.8817
AT3G19090			RNA-binding protein (.1)		Potri.009G106500 [exp]	7.74	0.8766
AT2G32580			Protein of unknown function (D...		Potri.004G006500 [exp]	22.89	0.8611
AT1G71930	NAC	VND7, ANAC030	Arabidopsis NAC domain contain...		Potri.015G002900 [exp]	26.77	0.7641	NAC147
AT2G26650		AKT1, ATAKT1	K+ transporter 1, K+ transport...		Potri.006G154600 [exp]	28.49	0.8429	AKT1.1
AT4G16340		SPK1	SPIKE1, guanyl-nucleotide exch...		Potri.004G000750 [exp]	37.38	0.8511
AT5G62740		AtHIR4, ATHIR1	hypersensitive induced reactio...		Potri.015G065001 [exp]	39.49	0.8409
					Potri.006G062150 [exp]	42.74	0.8473
AT1G69230		SP1L2	SPIRAL1-like2 (.1.2)		Potri.017G095200 [exp]	47.49	0.8473

Compare expression of checked genes

Potri.014G190000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.