Plant FIBer expression Database

Potri.014G190600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G07140 789 / 0 GPI transamidase component Gpi16 subunit family protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10025918
[exp]
873 / 0 AT3G07140 772 / 0.0 GPI transamidase component Gpi16 subunit family protein (.1.2)
Lus10038183
[exp]
871 / 0 AT3G07140 777 / 0.0 GPI transamidase component Gpi16 subunit family protein (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF04113 Gpi16 Gpi16 subunit, GPI transamidase component
Representative CDS sequence
>Potri.014G190600.1 pacid=42762464 polypeptide=Potri.014G190600.1.p locus=Potri.014G190600 ID=Potri.014G190600.1.v4.1 annot-version=v4.1
ATGGAACTTCCACCAAGATGGGCTTTCTTACTCTTTTTACTGTTATCTTCAACAAAAGCCTCTGGATCGGCAGTAGATAAAGAAGAGTTCCAAGAGGAAT
TGTTGTTGAAGCCGTTGCCTGATCGGAAAGTGTTGGCTCATTTCCACTTTGAAACTAGAGCTCCTCCTTGCAATTCCAATGGCCGCCGCCACCATCATCT
CTTCCCTAAAGCCATTTCTCAGATGGTGGAGAAATTCCGGGTCAAGGAAATGGAATTATCGTTCACACAAGGTCGGTGGAACTATGAACGCTGGGGTGGG
TTTGACACCATGTCAAGCAACAATGCTAAGCCTCCTGGAGTTGAGTTGTGGGCTGTCTTTGATGTTCCTAAAGAGCAAGTTGATGCTTCTTGGAAGAATT
TAACCCATACCCTTTCAGGTCTTTTCTGTGCTTCAATTAATTTCCTCGAGTCATCTACCATGTATTCAGCCCCTGAATGGAGCTTTAGGCAAGCCTCTGG
CAGTCTGAGGTATGGCATGCTGCCCCGTGAGGCTGTTTGCACTGAGAACCTAACTCCATGGTTGAAGCTCCTTCCTTGTCGAGATAATGCTGGGCTTTCT
GCCTTAATGGACAGGCCATCAATTTATACAAGTTTTTATCATTCTCAGCGACTGCATTTGACTTCAAATTCATCTGATCTTGAGGGGTTGAATGGCATTG
TTCTAGAACAAACACTTACTGTTGTTCTTCATCCCAGTAGTCAAAGAACTAGCTTGACTCATATTAGTGAATCGTATCTTCAACCAAGCTGGTCTTTGAG
TTCAATTTTTGGTAGGAAAGTCAATGGGAGATGTGCTCTTGCTAAGTCTAGTAAAGTATATCTTCAGCTTGAGAGAGGCCTAGTTTCTGAACTGGAGAAA
AATATTGGCTCTGAAGGGTATGATGTTGAAGCCAACTTTGAATTGTCAGTTAATCCAGACAGGGTACTTAAAGAAGAAAATAGTAGGCATGGAATAGGCT
CCTCTTTACTTTATGAATTTTCAGTTGACAAGTACAGCAACTCTAAACCATTTGATCTAGGCCTGACATGGAAATTTCCTGTAATATGGTCATGTCAACA
AGCTCCATTACATGCTATTAGATTTTTGATGGGAAGCGGGAATGAAAGAGGTGCAATTGCTATCTTGTTGAAATCTACAGATTTGAATGACAGTTCCCCG
GGTGCTGATAGTGCTAGTGATGGATGTGAGTTGCATGTTAATATTTTCCAAATTGTCCCTTGGTATATCAGGGTATATTATCATTCTCTCCAGCTGTTTG
TGGATGATCAACTGAAGGCAGTTGGAGCTTTTGTGGAAAAGATACATGTCATTCCTTCCAAAGACAAGATATCTCCTGGTATGATGGAGATGGTACTGAA
GCTTCCTTGTGGTGTGAAATCAGCTGCTTTGACATTAGATTTTGATAAGGGTTTTTTGCACATTGATGAATACCCTCCAGATGCCAATCAAGGATTTGAT
ATTCCATCAGCTGCAATAAGCTTTCCCAACTTCCATGCAAGTATGCATTTCCCTAGCAACGACTCTGAGAGAAAATCACCCATGCTGTCTAAATTTCAGG
AAAGCAGTCCTGTTCTCTCGTACACTGAAGTATTACTTGTACCTTTGACAACTCCTGATTTTAGCATGCCATACAATGTCATCACTATCACGTGCACAGT
GTTTGCTCTGTATTTTGGATCGCTGCTCAATGTACTTTGGCAGCGGGTTGGAGAGAAGGAAAGACTTCTTAAAAGCAAAGCTGCTGCTGTAAAAACTGGT
CGCCCTTCTGAACTGCTGTCCAGACTGTCAGCCAAGCTTAGAGGAAGATCACAGGAGCCTTCCCAATCACCTTCAGAATCATCACCCTTGATAAATTCTA
AATTAGTACTTAAAGTCTTGTTAATGGCTGCACTTGCTGTTGCGTGGCAATATTATCTTGGATGA
AA sequence
>Potri.014G190600.1 pacid=42762464 polypeptide=Potri.014G190600.1.p locus=Potri.014G190600 ID=Potri.014G190600.1.v4.1 annot-version=v4.1
MELPPRWAFLLFLLLSSTKASGSAVDKEEFQEELLLKPLPDRKVLAHFHFETRAPPCNSNGRRHHHLFPKAISQMVEKFRVKEMELSFTQGRWNYERWGG
FDTMSSNNAKPPGVELWAVFDVPKEQVDASWKNLTHTLSGLFCASINFLESSTMYSAPEWSFRQASGSLRYGMLPREAVCTENLTPWLKLLPCRDNAGLS
ALMDRPSIYTSFYHSQRLHLTSNSSDLEGLNGIVLEQTLTVVLHPSSQRTSLTHISESYLQPSWSLSSIFGRKVNGRCALAKSSKVYLQLERGLVSELEK
NIGSEGYDVEANFELSVNPDRVLKEENSRHGIGSSLLYEFSVDKYSNSKPFDLGLTWKFPVIWSCQQAPLHAIRFLMGSGNERGAIAILLKSTDLNDSSP
GADSASDGCELHVNIFQIVPWYIRVYYHSLQLFVDDQLKAVGAFVEKIHVIPSKDKISPGMMEMVLKLPCGVKSAALTLDFDKGFLHIDEYPPDANQGFD
IPSAAISFPNFHASMHFPSNDSERKSPMLSKFQESSPVLSYTEVLLVPLTTPDFSMPYNVITITCTVFALYFGSLLNVLWQRVGEKERLLKSKAAAVKTG
RPSELLSRLSAKLRGRSQEPSQSPSESSPLINSKLVLKVLLMAALAVAWQYYLG

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G07140 GPI transamidase component Gpi... Potri.014G190600
[exp]
0 1
AT1G78770 APC6 anaphase promoting complex 6 (... Potri.011G108800
[exp]
1.41 0.7849
AT3G23990 HSP60-3B, HSP60 HEAT SHOCK PROTEIN 60-3B, heat... Potri.003G173900
[exp]
6.48 0.7635
AT2G29560 ENOC cytosolic enolase (.1) Potri.009G040700
[exp]
6.70 0.8194
AT2G47580 U1A spliceosomal protein U1A (.1) Potri.002G203600
[exp]
8.71 0.7627
AT4G21150 HAP6 HAPLESS 6, ribophorin II (RPN2... Potri.005G226100
[exp]
9.79 0.7524
AT2G19385 zinc ion binding (.1) Potri.006G146200
[exp]
12.48 0.7429
AT2G32320 tRNAHis guanylyltransferase (.... Potri.002G233300
[exp]
12.68 0.7177
AT2G34560 P-loop containing nucleoside t... Potri.011G085200
[exp]
21.23 0.6982
AT1G65290 MTACP2 mitochondrial acyl carrier pro... Potri.019G055300
[exp]
21.49 0.7583
AT4G27640 ARM repeat superfamily protein... Potri.010G169800
[exp]
30.41 0.7149

Potri.014G190600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.