Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07330 429 / 3e-148 ATCSLC6, ATCSLC06 CELLULOSE-SYNTHASE LIKE C6, Cellulose-synthase-like C6 (.1) AT3G28180 385 / 3e-131 ATCSLC4, CSLC4, ATCSLC04 CELLULOSE-SYNTHASE LIKE C4, Cellulose-synthase-like C4 (.1) AT4G31590 383 / 6e-130 ATCSLC5, ATCSLC05 CELLULOSE-SYNTHASE LIKE C5, Cellulose-synthase-like C5 (.1) AT2G24630 383 / 6e-130 ATCSLC8, ATCSLC08 CELLULOSE-SYNTHASE LIKE C8, Glycosyl transferase family 2 protein (.1) AT4G07960 375 / 5e-127 ATCSLC12 CELLULOSE-SYNTHASE LIKE C12, Cellulose-synthase-like C12 (.1) AT5G22740 261 / 3e-84 ATCSLA2, ATCSLA02 CELLULOSE SYNTHASE-LIKE A 2, ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE A2, ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE A02, cellulose synthase-like A02 (.1) AT5G03760 254 / 7e-82 ATCSLA9, RAT4, CSLA9, ATCSLA09 RESISTANT TO AGROBACTERIUM TRANSFORMATION 4, CELLULOSE SYNTHASE LIKE A9, Nucleotide-diphospho-sugar transferases superfamily protein (.1) AT1G23480 252 / 2e-81 ATCSLA3, ATCSLA03 cellulose synthase-like A3 (.1.2.3) AT5G16190 244 / 1e-78 ATCSLA11 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE LIKE A11, cellulose synthase like A11 (.1) AT2G35650 246 / 4e-78 ATCSLA7, CSLA7, ATCSLA07 CELLULOSE SYNTHASE LIKE A7, cellulose synthase like (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G190900 [exp] 472 / 3e-166 AT3G07330 863 / 0.0 CELLULOSE-SYNTHASE LIKE C6, Cellulose-synthase-like C6 (.1) Potri.002G248400 [exp] 464 / 6e-162 AT3G07330 957 / 0.0 CELLULOSE-SYNTHASE LIKE C6, Cellulose-synthase-like C6 (.1) Potri.005G146900 [exp] 397 / 2e-135 AT4G07960 1050 / 0.0 CELLULOSE-SYNTHASE LIKE C12, Cellulose-synthase-like C12 (.1) Potri.006G270900 [exp] 389 / 3e-132 AT4G31590 1085 / 0.0 CELLULOSE-SYNTHASE LIKE C5, Cellulose-synthase-like C5 (.1) Potri.002G114200 [exp] 389 / 3e-132 AT4G07960 1031 / 0.0 CELLULOSE-SYNTHASE LIKE C12, Cellulose-synthase-like C12 (.1) Potri.018G009300 [exp] 388 / 5e-132 AT4G31590 1077 / 0.0 CELLULOSE-SYNTHASE LIKE C5, Cellulose-synthase-like C5 (.1) Potri.008G026400 [exp] 259 / 8e-84 AT5G03760 854 / 0.0 RESISTANT TO AGROBACTERIUM TRANSFORMATION 4, CELLULOSE SYNTHASE LIKE A9, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Potri.004G189000 [exp] 259 / 1e-83 AT5G22740 927 / 0.0 CELLULOSE SYNTHASE-LIKE A 2, ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE A2, ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE A02, cellulose synthase-like A02 (.1) Potri.006G116900 [exp] 256 / 3e-82 AT5G03760 928 / 0.0 RESISTANT TO AGROBACTERIUM TRANSFORMATION 4, CELLULOSE SYNTHASE LIKE A9, Nucleotide-diphospho-sugar transferases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038217 [exp] 423 / 3e-148 AT3G07330 821 / 0.0 CELLULOSE-SYNTHASE LIKE C6, Cellulose-synthase-like C6 (.1) Lus10025886 [exp] 424 / 8e-146 AT3G07330 994 / 0.0 CELLULOSE-SYNTHASE LIKE C6, Cellulose-synthase-like C6 (.1) Lus10007715 [exp] 389 / 1e-132 AT4G07960 1010 / 0.0 CELLULOSE-SYNTHASE LIKE C12, Cellulose-synthase-like C12 (.1) Lus10018651 [exp] 387 / 2e-132 AT4G07960 978 / 0.0 CELLULOSE-SYNTHASE LIKE C12, Cellulose-synthase-like C12 (.1) Lus10039440 [exp] 386 / 3e-131 AT3G28180 1035 / 0.0 CELLULOSE-SYNTHASE LIKE C4, Cellulose-synthase-like C4 (.1) Lus10039475 [exp] 385 / 6e-131 AT3G28180 1035 / 0.0 CELLULOSE-SYNTHASE LIKE C4, Cellulose-synthase-like C4 (.1) Lus10020120 [exp] 380 / 1e-129 AT4G31590 1012 / 0.0 CELLULOSE-SYNTHASE LIKE C5, Cellulose-synthase-like C5 (.1) Lus10026923 [exp] 382 / 2e-129 AT4G31590 1078 / 0.0 CELLULOSE-SYNTHASE LIKE C5, Cellulose-synthase-like C5 (.1) Lus10020539 [exp] 255 / 3e-83 AT5G22740 612 / 0.0 CELLULOSE SYNTHASE-LIKE A 2, ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE A2, ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE A02, cellulose synthase-like A02 (.1) Lus10008646 [exp] 258 / 4e-83 AT5G03760 890 / 0.0 RESISTANT TO AGROBACTERIUM TRANSFORMATION 4, CELLULOSE SYNTHASE LIKE A9, Nucleotide-diphospho-sugar transferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [poplar] [flax] GT-A PF13641 [poplar] [flax] Glyco_tranf_2_3 Glycosyltransferase like family 2
Representative CDS sequence Show only first row Show all	>Potri.014G190701.1 pacid=42764084 polypeptide=Potri.014G190701.1.p locus=Potri.014G190701 ID=Potri.014G190701.1.v4.1 annot-version=v4.1 ATGCAGGTTTACCAACAATCTATTGCAGCCTGCTGTATCCAGGACTGGCCAAAGGAGAGAATGCTTATACAGGTTTTGGATGATTCTGATGAGTTAGATG CCCAACTCCTTATCAAGGCTGAAGTACAGAAATGGCAACAAAGGGGTGTGCATATATTGTATAGGCACCGTCTTATACGCACAGGCTACAAGGCTGGGAA CCCGAAATCTGCAATGAGCTGTGATTATGTAAAAGATTATGAGTTTGTAGCAATATTTGATGCTGATTTTCAGCCAGGACCTGATTTCTTGAAGAGAACT ATTCCTCACTTCAAGGGGAAGGATGACCTAGCATTGGTCCAAGCAAGGTGGGCATTTGTAAACAAGGATGAAAACTTGCTTACAAGACTGCAGAACATAA ACTTATCATTCCACTTTGAGGTTGAGCAACAAGTGAATGGTGTTTTCATCAACTTTTTTGGTTTTAATGGAACTGCTGGTGTATGGAGGATTAAAGCCCT TGAAGACTGTGGTGGTTGGTTGGAACGGACAACAGTTGAAGACATGGATATTGCTGTTCGTGCTCATCTTTGTGGATGGAAGTTCATATATTTGAATGAT GTTAAGTGCCTTTGTGAACTTCCAGAGTCCTATGAGGCATACAAAAAACAGCAACATCGTTGGCATTCAGGTCCAATGCAGTTGTTCCGTTTGTGCTTTG TTGACATACTTCGTGCAAAGGTACTGAAGTTTTCCCCCCCTCTTGCTATCATTTATATTTGGTAG
AA sequence Show only first row Show all	>Potri.014G190701.1 pacid=42764084 polypeptide=Potri.014G190701.1.p locus=Potri.014G190701 ID=Potri.014G190701.1.v4.1 annot-version=v4.1 MQVYQQSIAACCIQDWPKERMLIQVLDDSDELDAQLLIKAEVQKWQQRGVHILYRHRLIRTGYKAGNPKSAMSCDYVKDYEFVAIFDADFQPGPDFLKRT IPHFKGKDDLALVQARWAFVNKDENLLTRLQNINLSFHFEVEQQVNGVFINFFGFNGTAGVWRIKALEDCGGWLERTTVEDMDIAVRAHLCGWKFIYLND VKCLCELPESYEAYKKQQHRWHSGPMQLFRLCFVDILRAKVLKFSPPLAIIYIW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G07330		ATCSLC6, ATCSLC...	CELLULOSE-SYNTHASE LIKE C6, Ce...		Potri.014G190701 [exp]	0	1
AT3G61050		AtCLB, NTMCTYPE...	calcium-dependent lipid-bindin...		Potri.014G072800 [exp]	3.16	0.8926
AT5G27220			Frigida-like protein (.1)		Potri.005G044200 [exp]	3.87	0.9026
AT1G43850		SEU	SEUSS transcriptional co-regul...		Potri.010G052150 [exp]	5.47	0.8838
AT4G14770	CPP	ATTCX2	TESMIN/TSO1-like CXC 2 (.1)		Potri.018G030000 [exp]	7.34	0.8956
AT1G05910			cell division cycle protein 48...		Potri.017G031150 [exp]	7.34	0.9000
AT5G09790		PDE336, SDG15, ...	SETDOMAIN GROUP 15, PIGMENT DE...		Potri.007G109900 [exp]	9.64	0.8500
AT1G80350		FTR, FRC2, FRA2...	KATANIN 1, FAT ROOT, FURCA2, F...		Potri.017G013601 [exp]	9.79	0.9060
					Potri.012G060751 [exp]	11.22	0.8703
AT5G05240			Uncharacterised conserved prot...		Potri.013G091100 [exp]	12.48	0.8851
AT1G16780		AtVHP2;2, AVPL1	Inorganic H pyrophosphatase fa...		Potri.008G003502 [exp]	12.96	0.8898

Compare expression of checked genes

Potri.014G190701 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.