Plant FIBer expression Database

Potri.014G191100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G48520 993 / 0 AtAUG3 augmin 3, unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10038231
[exp]
992 / 0 AT5G48520 961 / 0.0 augmin 3, unknown protein
Lus10025869
[exp]
912 / 0 AT5G48520 876 / 0.0 augmin 3, unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF14932 HAUS-augmin3 HAUS augmin-like complex subunit 3
Representative CDS sequence
>Potri.014G191100.7 pacid=42762375 polypeptide=Potri.014G191100.7.p locus=Potri.014G191100 ID=Potri.014G191100.7.v4.1 annot-version=v4.1
ATGAGCGGGACTCGATTATGCGCATTGCTCGGAGAATTAGGTTACGAAGGGGCAGAAACACTAGACCCAGACAGTTTCGAATGGCCTTTCCAATACGACG
ACGCACGCCCTATCCTCGACTGGATCTGCTCCAGTCTCCGCTCTTCCAACGTCCTCTCCCTCTCCGACCTCTCCCGGTACGAACAGTTTCTTCAAGAGGA
GAAGCTTTTGGAGGGTGAGGACTTGGAGTTTGCTTATGATAGCATTTCAGCTTTTTCTTCAAGGAGAGACAATCAGGAGGAAGTTTTTGGCGCTGAAGAA
CCCTTAAAAGATATAAGGGATGCCACTTCGGCGTATAAAGCTGAAGCTTTGGAGTTGCAGAAACAGCTCAGGCATTTGCAGGCGCAGTTTGATTTGCTTT
CTGGCCAGGCTTCTGCTTTGATCCAAGGGAGGCGGGCTCGAGTTGCTGCAACATCTACTGTGAATGGATGCCTTGCTGCAGTTGATGATACTCTTTCAGC
ACGAAACTTAAGGATGAATGAAGTTCTTGGAAGGATTGCATCTACAGCACAAGAGTTGTCTCACTATCATTCTGGCGATGAGGGTGGCATCTATTTAGCT
TACTCTGATTTTCATCAGTACTGGCTTCAAGATTCATCTTGTACAAAGGAAATAAATCAGTGGTTCTCTAAGCAACTGGACACGGGACCTTTTCGACTAG
TAGCCGAGGAGGGCAAATCAAAATGTTCGTGGGTGAGTCTTGATGACATCTCAAATATTTTAGTACGAGCAGATTTAGAACAATCCCATCACCAGCGTGT
TTCAGAATTGCAACGGCTTCGTTCTATATTTGGAACAAGTGAAAGGCAGTGGGTTGAAGCCCAGGTTGAGAATGCCAAGCAGCAAGCTATTCTGATGGTA
CTTAAATCTCAAGTAACATCAGATGAAGCACACATACATCTTGATCTTCATTCTCTAAGGAGAAAACATGTTGTATTGGTGGAAGAGCTTTCAAATCTTC
ATCACAAAGAAGATAAGTTATTATCTGAGACCATTCCAGATCTTTGTTGGGAGTTAGCTCAACTCCAAGACACATACATTTTGCAAGGTGACTATGATTT
AAAGGTCATGCGTCAAGAATGCTATATTAATCGACAGAAAATGTTCATAAATCATCTAATAAATCAACTAGCAAGGCATCAGTTCTTGAAAATAGCTTGT
CAGTTGGAAAAGAAGAACATGCTTGGAGCATATTCATTACTTAAAGTCATTGAGTCAGAGCTTCAAGGGTACCTTTCAGCAACTAAGGGCCGAGTGGGTT
GTTGCCTGGCACTAACTCAAGCTGCATCTGATATACAAGAACAAGGAGCAGTGGATGATCGGGATACTCTTCTGCATGGTATTAGGGACCTTCTAAGTAT
CCATTCAAATGCTCAAGCCGGATTATCAATATATGTATCAGCTCCTGGCATTGTACAACAGATTTCTGCTCTGCATGCAGATTTGATGACACTTCAGTCT
GATCTTGAGAACTCCCTTCCAGAAGACAGAAATAGATGCATCATCGAGCTGTGTACACTTATTCAAAGTTTGCAGCAATTGTTGTTTGCATCTTCAACAA
CTGCACAGCCAATACTGACACCTCGGACATTAATGAAGGAGCTTGATGAAATGGAAAAGATCAACGCAAAACTATCTGTGGCGGTTGAAGAGGTGACCCT
TGAACACTGCAAGAAGAATGAGATTGTAAAACATCATTCACAAGAGGTTGGACTTCAAAGGCGTGTTTTTGTTGATTTCTTCTGCAATCCTGAACGTTTG
AGAAGCCAAGTTAGAGAATTGACTGCTCGAGTCAGAGCTTTGCAAGTTGCTTGA
AA sequence
>Potri.014G191100.7 pacid=42762375 polypeptide=Potri.014G191100.7.p locus=Potri.014G191100 ID=Potri.014G191100.7.v4.1 annot-version=v4.1
MSGTRLCALLGELGYEGAETLDPDSFEWPFQYDDARPILDWICSSLRSSNVLSLSDLSRYEQFLQEEKLLEGEDLEFAYDSISAFSSRRDNQEEVFGAEE
PLKDIRDATSAYKAEALELQKQLRHLQAQFDLLSGQASALIQGRRARVAATSTVNGCLAAVDDTLSARNLRMNEVLGRIASTAQELSHYHSGDEGGIYLA
YSDFHQYWLQDSSCTKEINQWFSKQLDTGPFRLVAEEGKSKCSWVSLDDISNILVRADLEQSHHQRVSELQRLRSIFGTSERQWVEAQVENAKQQAILMV
LKSQVTSDEAHIHLDLHSLRRKHVVLVEELSNLHHKEDKLLSETIPDLCWELAQLQDTYILQGDYDLKVMRQECYINRQKMFINHLINQLARHQFLKIAC
QLEKKNMLGAYSLLKVIESELQGYLSATKGRVGCCLALTQAASDIQEQGAVDDRDTLLHGIRDLLSIHSNAQAGLSIYVSAPGIVQQISALHADLMTLQS
DLENSLPEDRNRCIIELCTLIQSLQQLLFASSTTAQPILTPRTLMKELDEMEKINAKLSVAVEEVTLEHCKKNEIVKHHSQEVGLQRRVFVDFFCNPERL
RSQVRELTARVRALQVA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G48520 AtAUG3 augmin 3, unknown protein Potri.014G191100
[exp]
0 1
AT5G62740 AtHIR4, ATHIR1 hypersensitive induced reactio... Potri.012G070500
[exp]
3.46 0.8954
AT4G10955 alpha/beta-Hydrolases superfam... Potri.003G141100
[exp]
6.00 0.9141
AT2G38130 ATMAK3 Acyl-CoA N-acyltransferases (N... Potri.011G139300
[exp]
6.48 0.8927 ATMAK3.5
AT5G39510 ZIG1, SGR4, ATV... SHOOT GRAVITROPSIM 4, VESICLE ... Potri.004G115700
[exp]
7.74 0.9047
AT3G51390 DHHC-type zinc finger family p... Potri.007G060100
[exp]
8.83 0.8848
AT3G49660 AtWDR5a human WDR5 \(WD40 repeat\) hom... Potri.015G026100
[exp]
9.32 0.8667
AT1G79450 ALIS5 ALA-interacting subunit 5 (.1.... Potri.004G081100
[exp]
11.13 0.9030
AT1G49160 WNK7 Protein kinase superfamily pro... Potri.005G057300
[exp]
11.13 0.8662
AT2G03350 Protein of unknown function, D... Potri.008G092500
[exp]
11.40 0.9079
AT3G01390 AVMA10, VMA10 vacuolar membrane ATPase 10 (.... Potri.010G222000
[exp]
12.04 0.9013 VMA10.2

Potri.014G191100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.