Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48910 852 / 0 LPA66 LOW PSII ACCUMULATION 66, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G66520 541 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G06540 508 / 1e-173 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G37380 497 / 2e-169 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G29760 484 / 1e-162 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G62890 476 / 7e-162 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G40405 475 / 4e-161 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G21065 471 / 1e-159 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT1G59720 464 / 1e-156 CRR28 CHLORORESPIRATORY REDUCTION28, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G08070 465 / 1e-155 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G065500 [exp] 548 / 0 AT5G06540 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G012600 [exp] 531 / 0 AT2G29760 540 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.007G050200 [exp] 526 / 0 AT4G37380 817 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G239600 [exp] 525 / 3e-180 AT5G59200 694 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 80, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G237000 [exp] 501 / 3e-171 AT5G66520 544 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G011000 [exp] 506 / 7e-171 AT1G08070 572 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.009G044700 [exp] 503 / 3e-170 AT2G29760 1013 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G071800 [exp] 498 / 1e-168 AT1G08070 606 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G369900 [exp] 489 / 2e-166 AT5G66520 512 / 2e-175 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014298 [exp] 547 / 0 AT5G66520 748 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10026006 [exp] 540 / 0 AT5G66520 746 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029344 [exp] 537 / 0 AT5G06540 803 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10024971 [exp] 530 / 0 AT4G37380 772 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010909 [exp] 527 / 1e-180 AT5G66520 537 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10031423 [exp] 525 / 7e-180 AT5G66520 538 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010385 [exp] 522 / 4e-179 AT4G37380 758 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030053 [exp] 524 / 1e-178 AT1G08070 884 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018223 [exp] 487 / 5e-164 AT2G29760 931 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10040680 [exp] 486 / 1e-163 AT2G29760 926 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family CL0020 [poplar] [flax] TPR PF13812 [poplar] [flax] PPR_3 Pentatricopeptide repeat domain CL0109 [poplar] [flax] CDA PF14432 [poplar] [flax] DYW_deaminase DYW family of nucleic acid deaminases
Representative CDS sequence Show only first row Show all	>Potri.014G191200.1 pacid=42762850 polypeptide=Potri.014G191200.1.p locus=Potri.014G191200 ID=Potri.014G191200.1.v4.1 annot-version=v4.1 ATGAACACGATCATCCACAAACCAAGCCCATCTCCAAATCACCCATCTTCACTCTTCCCTCAAATCAGCAGATGCAAGACTACAAGACACCTCAAGCAAA TCCATGCCCACTTCATCAAAACAGGCCAAATACACCACCCTCTTGCTGCTGCTGAACTCCTCAAATTTCTCACCCTCTCTACTCAACGTGAAATCAAATA CGCACGTAAGTTTTTTAGCCAAATCCATCATCCCAATTGTTTCTCTTGGAATACTATAATTAGAGCTTTAGCTGATTCTGATGACGATGATCTTTTTCAT GTTAACTCATTAGAGGCATTACTGTATTTTTCCCACATGCTTACTGATGGTCTCGTGGAACCTAATAAATTCACTTTCCCTTGTGTGCTAAAAGCCTGTG CGAAATTGGCTAGGATTGAAGAGGGGAAACAGCTTCATGGGTTTGTTGTGAAATTAGGATTGGTTAGTGATGAGTTTGTTCGTAGTAATCTTGTTAGAGT GTATGTTATGTGTGGGGCCATGAAAGATGCTCATGTTTTGTTTTATCAGACGAGGCTAGAGGGTAATGTTGTTTTATGGAATGTTATGATAGATGGGTAT GTGAGGATGGGGGATCTTAGAGCTTCTAGGGAGTTGTTTGATAGTATGCCTAATAAAAGTGTGGTTTCGTGGAATGTGATGATATCTGGATGTGCACAAA ATGGACACTTTAAGGAGGCAATTGAGATGTTTCATGATATGCAATTGGGAGATGTGCCTCCAAATTACGTGACTTTGGTTAGTGTTCTTCCTGCTGTCTC GCGACTAGGGGCTATTGAATTAGGAAAATGGGTGCATCTGTTTGCAGAGAAGAATGAGATTGAAATCGATGATGTGCTTGGTTCTGCTTTGATCGATATG TATTCTAAATGTGGTAGCATTGACAAAGCAGTCCAGGTATTTGAGGGGATAAGAAATAAAAAGAATCCCATTACTTGGAGTGCTATCATTGGCGGGCTTG CTATGCATGGTCGAGCAAGGGACGCTCTTGATCACTTTTGGAGAATGCAACAAGCTGGAGTGACTCCCAGTGATGTTGTGTATATTGGTGTATTGAGTGC TTGTAGCCATGCTGGTTTAGTTGAAGAGGGTCGATCTATTTATTACCATATGGTTAACATTGTTGGTCTCTTGCCTAGGATTGAACATTATGGGTGCATG GTTGATCTATTAGGCCGTGCTGGGTGTTTAGAAGAGGCTGAACAGCTTATACTTAACATGCCTGTTAAACCGGATGACGTGATATTGAAGGCCTTGCTTG GTGCTTGTAAAATGCACGGAAACATTGAGATGGGAGAACGTATTGCAAAATTTTTGATGGGTTGGTATCCACATGATAGTGGATCTTATGTGGCTCTCTC CAATATGTTTGCCTCCGAAGGAAACTGGGAGGGGGTTGTCAAGGTGAGGCTTAAAATGAAGGAATTGGATATAAGGAAAGACCCTGGATGTAGTTGGATT GAGCTTGATGGAGTGATACACGAATTCCTTGTGGAAGATGATTCCCATCCTAGAGCTGAAGGAATCCATTCGATGTTGGAGGAAATGTCAGATCGATTAA GGTCAGTGGGATACAGGCCAAACACTACCCAAGTCTTGCTCAACATGGACGAAAAAGAAAAACAAAGTGCATTGCACTATCATAGTGAAAAGATTGCAAT TGCCTTTGGCTTAATCAGTACAAGGCCCCAGACACCACTCCAAATTGTTAAGAACCTGCGTGTCTGTGAAGATTGTCACTCTTCAATAAAACTTGTCTCA AAGATTTATAATCGTAAGATAATCGTAAGAGACCGGAAGCGCTTCCATCATTTCGAGAACGGTTCGTGTTCCTGTATGGACTATTGGTGA
AA sequence Show only first row Show all	>Potri.014G191200.1 pacid=42762850 polypeptide=Potri.014G191200.1.p locus=Potri.014G191200 ID=Potri.014G191200.1.v4.1 annot-version=v4.1 MNTIIHKPSPSPNHPSSLFPQISRCKTTRHLKQIHAHFIKTGQIHHPLAAAELLKFLTLSTQREIKYARKFFSQIHHPNCFSWNTIIRALADSDDDDLFH VNSLEALLYFSHMLTDGLVEPNKFTFPCVLKACAKLARIEEGKQLHGFVVKLGLVSDEFVRSNLVRVYVMCGAMKDAHVLFYQTRLEGNVVLWNVMIDGY VRMGDLRASRELFDSMPNKSVVSWNVMISGCAQNGHFKEAIEMFHDMQLGDVPPNYVTLVSVLPAVSRLGAIELGKWVHLFAEKNEIEIDDVLGSALIDM YSKCGSIDKAVQVFEGIRNKKNPITWSAIIGGLAMHGRARDALDHFWRMQQAGVTPSDVVYIGVLSACSHAGLVEEGRSIYYHMVNIVGLLPRIEHYGCM VDLLGRAGCLEEAEQLILNMPVKPDDVILKALLGACKMHGNIEMGERIAKFLMGWYPHDSGSYVALSNMFASEGNWEGVVKVRLKMKELDIRKDPGCSWI ELDGVIHEFLVEDDSHPRAEGIHSMLEEMSDRLRSVGYRPNTTQVLLNMDEKEKQSALHYHSEKIAIAFGLISTRPQTPLQIVKNLRVCEDCHSSIKLVS KIYNRKIIVRDRKRFHHFENGSCSCMDYW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G48910		LPA66	LOW PSII ACCUMULATION 66, Pent...		Potri.014G191200 [exp]	0	1
AT4G09040			RNA-binding (RRM/RBD/RNP motif...		Potri.005G161000 [exp]	2.23	0.9758
AT2G36000		EMB3114	EMBRYO DEFECTIVE 3114, Mitocho...		Potri.016G072200 [exp]	8.71	0.9692
AT3G02450			cell division protein ftsH, pu...		Potri.004G106500 [exp]	9.79	0.9679
AT1G06190			Rho termination factor (.1.2)		Potri.002G037800 [exp]	9.94	0.9677
AT1G32500		ABCI7, ATNAP6	ATP-binding cassette I7, non-i...		Potri.001G144500 [exp]	11.00	0.9648	NAP6.2
AT3G26040			HXXXD-type acyl-transferase fa...		Potri.011G124128 [exp]	11.48	0.9684
AT2G35490			Plastid-lipid associated prote...		Potri.001G137900 [exp]	12.24	0.9686
AT1G09900			Pentatricopeptide repeat (PPR-...		Potri.002G109500 [exp]	12.96	0.9682
AT3G58830			haloacid dehalogenase (HAD) su...		Potri.002G060600 [exp]	15.16	0.9676
AT4G26500		SUFE1, EMB1374,...	SULFUR E 1, MBRYO DEFECTIVE 13...		Potri.001G468300 [exp]	20.54	0.9245

Compare expression of checked genes

Potri.014G191200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.