Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G44005 50 / 3e-09 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G257600 [exp] 63 / 4e-14 ND / Potri.007G000801 [exp] 36 / 0.0004 ND /
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024940 [exp] 54 / 6e-11 ND 42 / 2e-06 Lus10003608 [exp] 49 / 6e-09 AT5G44005 55 / 4e-11 unknown protein Lus10008224 [exp] 45 / 2e-07 AT5G44005 57 / 6e-12 unknown protein Lus10003610 [exp] 44 / 6e-07 AT5G44005 59 / 1e-12 unknown protein Lus10008220 [exp] 44 / 7e-07 AT5G44005 55 / 4e-11 unknown protein Lus10003607 [exp] 44 / 9e-07 ND 48 / 2e-08 Lus10008223 [exp] 43 / 2e-06 ND 41 / 6e-06 Lus10008222 [exp] 43 / 9e-06 AT4G12010 327 / 4e-96 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10003609 [exp] 40 / 2e-05 AT5G44005 51 / 9e-10 unknown protein Lus10008219 [exp] 41 / 3e-05 AT5G44005 56 / 2e-10 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.014G192100.1 pacid=42764510 polypeptide=Potri.014G192100.1.p locus=Potri.014G192100 ID=Potri.014G192100.1.v4.1 annot-version=v4.1 ATGGAAGGAAGCATGAGAGCTTTAGGCTTACAAGGCTTGAGGAGAATCCCATTCTTGAGGTGGCGGAGCAGAAATTCAAGCACTGGGTCTGCAGTTACAC TTGTTAGTGTGAAAAGACGACTGCCTTTTTGTCGCCACGGTGGATCATCATTCTTAATGCAGCTATTTTGGAAGTTCAGGACTCAATGGAAGCAAGCTTT TAGGTGGCAAAGGAGCAGTGCACAGTGCAGCTATGATCTTTATAGCTACTCTCTGAACTTCGATGATGGTCCTCTGCCATGA
AA sequence Show only first row Show all	>Potri.014G192100.1 pacid=42764510 polypeptide=Potri.014G192100.1.p locus=Potri.014G192100 ID=Potri.014G192100.1.v4.1 annot-version=v4.1 MEGSMRALGLQGLRRIPFLRWRSRNSSTGSAVTLVSVKRRLPFCRHGGSSFLMQLFWKFRTQWKQAFRWQRSSAQCSYDLYSYSLNFDDGPLP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G44005			unknown protein		Potri.014G192100 [exp]	0	1
AT1G14980		CPN10	chaperonin 10 (.1)		Potri.009G068900 [exp]	2.82	0.8286	CPN10.2
AT4G15248	CO		B-box type zinc finger family ...		Potri.017G039400 [exp]	3.16	0.7827
AT2G47450		CPSRP43, CAO	CHLOROPLAST SIGNAL RECOGNITION...		Potri.004G180766 [exp]	8.48	0.7635
AT4G35750			SEC14 cytosolic factor family ...		Potri.005G107300 [exp]	15.29	0.8096
AT5G10600		CYP81K2	"cytochrome P450, family 81, s...		Potri.017G028200 [exp]	20.63	0.7926	CYP81R2v2,IFS1.55
AT3G21820		SDG36, ATXR2	SET DOMAIN PROTEIN 36, histone...		Potri.017G038700 [exp]	21.67	0.7266	SDG943
AT1G72970		HTH, EDA17	HOTHEAD, embryo sac developmen...		Potri.003G039000 [exp]	22.89	0.7905	ACE.1
AT5G08380		ATAGAL1	alpha-galactosidase 1 (.1)		Potri.010G255200 [exp]	25.09	0.7371
AT5G10600		CYP81K2	"cytochrome P450, family 81, s...		Potri.017G028450 [exp]	29.22	0.7863
AT5G39080			HXXXD-type acyl-transferase fa...		Potri.001G395300 [exp]	30.00	0.7243

Compare expression of checked genes

Potri.014G192100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.