Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G44000 493 / 1e-174 Glutathione S-transferase family protein (.1) AT4G19880 218 / 3e-67 Glutathione S-transferase family protein (.1.2.3) AT5G45020 211 / 3e-65 Glutathione S-transferase family protein (.1.2) AT5G44990 204 / 6e-62 Glutathione S-transferase family protein (.1.2.3) AT1G09640 43 / 0.0002 Translation elongation factor EF1B, gamma chain (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G121600 [exp] 210 / 2e-64 AT4G19880 600 / 0.0 Glutathione S-transferase family protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027233 [exp] 521 / 0 AT5G44000 508 / 2e-180 Glutathione S-transferase family protein (.1) Lus10038348 [exp] 211 / 7e-65 AT4G19880 580 / 0.0 Glutathione S-transferase family protein (.1.2.3) Lus10036209 [exp] 210 / 9e-65 AT4G19880 580 / 0.0 Glutathione S-transferase family protein (.1.2.3) Lus10014304 [exp] 187 / 4e-56 AT4G19880 499 / 3e-179 Glutathione S-transferase family protein (.1.2.3) Lus10038943 [exp] 182 / 6e-54 AT5G44000 186 / 1e-55 Glutathione S-transferase family protein (.1) Lus10026012 [exp] 81 / 2e-18 AT5G45020 123 / 3e-39 Glutathione S-transferase family protein (.1.2) Lus10005510 [exp] 79 / 2e-16 AT4G19880 162 / 3e-48 Glutathione S-transferase family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [poplar] [flax] Thioredoxin PF13409 [poplar] [flax] GST_N_2 Glutathione S-transferase, N-terminal domain CL0497 [poplar] [flax] GST_C PF13410 [poplar] [flax] GST_C_2 Glutathione S-transferase, C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.014G192300.1 pacid=42763696 polypeptide=Potri.014G192300.1.p locus=Potri.014G192300 ID=Potri.014G192300.1.v4.1 annot-version=v4.1 ATGTCCGGTGTATTACTCTTCAGCTCCCAATTTCCGATTTTCTCCACCACCACCACAGCCACCCAAAAAACCCACCGCTTCGCATGCCACGTCATCCCAA GACAATCCCTGAATCAAACCACCCCTCCTGATCAACAATCACCGAACCCCAAAACCATCCTTTCCACAATAACAAACCTATTGTGGGGCCAGTCACTGCC ACCAGGACTCCTAATATCCACCGTCCGTACAACATGGAACTCCACGTGGCAACTCATGATGTCCCAGCTCGCTCCCTCTGATTCCTCCGGCAGGTACACA AGACCCGCCTCGAAATTCCGCCTGAACCCTCCATTTACGCTCCAAAACTCAACAACACTTCACCTCTACGTGGGCTTACCTTGCCCATGGGCGCACAGGA CATTGATAGTTCGGGCGTTGAAGGGCCTGGAAGATGCGGTCCCTGTCTCAATTGCTGGACCGGGTCAAGATGGATCGTGGGAATTCAAAGATATTCCTAT CTCAAACAGGGATAGGAATATTCTTGTCCCGGGTAGGGATAATGCTAATGGGTGCCGGAATCTGAAGGGCGTGTATGGGTTAAGGAGGTCAGGTGGGTAC AGTGGGAGAGCTACGGTGCCAATGTTATGGGATGTGGAGAAGAAGGAAGTAGGGTGTAATGAGAGCTATGATATAATCGAGTTTTTCAATTCGGGTCTTA ACGGGTTGGCCCGGAACCCAGGTTTGGACTTATCACCAAAGGAATTGAAGGGAAAGATTGGGGAGTGGAATGGATTAATTTATCCCAATGTCAATAATGG GGTTTATAGGTGTGGGTTTGCTCAAAGTCAAGATGCATATGACAGTGCAGTGAATGGTTTATTCACTACACTGGAGGCGGTGGAAGATCATCTGACCACC TCGCGATACTTGTGTGGAGACACCTTGACTCTTGCGGATGTTTGCTTGTTTACCACTCTAATTCGGTTTGATATTGTGTATAATGTTCTGTTCAAGTGCA CAAAGAAGAAGCTGATTGAGTACCCAAATCTTCATGGCTACATGCGTGACATTTACCAGATGCCAAAGGTTGCTGAAACATGCAATTTTTCAGCCATTAT GGATGGTTACTACAAAGTACTCTTCCCACTGAATCCAGGCAGCATTTGTCCTGTTATGCCTTCTGGATGTGAGCATGATGTCCTCCTCTCCACCCCTCAC AATAGGGAGTCTTTGTCATTAGCGAACAAAACTACCAAACAGGATCACTGA
AA sequence Show only first row Show all	>Potri.014G192300.1 pacid=42763696 polypeptide=Potri.014G192300.1.p locus=Potri.014G192300 ID=Potri.014G192300.1.v4.1 annot-version=v4.1 MSGVLLFSSQFPIFSTTTTATQKTHRFACHVIPRQSLNQTTPPDQQSPNPKTILSTITNLLWGQSLPPGLLISTVRTTWNSTWQLMMSQLAPSDSSGRYT RPASKFRLNPPFTLQNSTTLHLYVGLPCPWAHRTLIVRALKGLEDAVPVSIAGPGQDGSWEFKDIPISNRDRNILVPGRDNANGCRNLKGVYGLRRSGGY SGRATVPMLWDVEKKEVGCNESYDIIEFFNSGLNGLARNPGLDLSPKELKGKIGEWNGLIYPNVNNGVYRCGFAQSQDAYDSAVNGLFTTLEAVEDHLTT SRYLCGDTLTLADVCLFTTLIRFDIVYNVLFKCTKKKLIEYPNLHGYMRDIYQMPKVAETCNFSAIMDGYYKVLFPLNPGSICPVMPSGCEHDVLLSTPH NRESLSLANKTTKQDH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G44000			Glutathione S-transferase fami...		Potri.014G192300 [exp]	0	1
AT1G32200		ACT1, ATS1	ACYLTRANSFERASE 1, phospholipi...		Potri.001G136600 [exp]	3.46	0.9525
AT2G18940			Tetratricopeptide repeat (TPR)...		Potri.006G166200 [exp]	5.19	0.9573
AT2G43235			unknown protein		Potri.007G124600 [exp]	6.70	0.9398
AT3G54660		ATGR2, EMB2360,...	glutathione reductase (.1)		Potri.015G037800 [exp]	7.34	0.9548	PtrcGR1,Pt-GR.3
AT3G17970		ATTOC64-III	translocon at the outer membra...		Potri.012G046900 [exp]	8.18	0.9184	TOC64.1
AT5G19040		ATIPT5	Arabidopsis thaliana ISOPENTEN...		Potri.010G030500 [exp]	8.24	0.9291
AT3G53130		CYP97C1, LUT1	LUTEIN DEFICIENT 1, CYTOCHROME...		Potri.006G119800 [exp]	8.60	0.9559	CYP97C4
AT4G02260		AT-RSH1, RSH1, ...	RELA-SPOT HOMOLOG 1, RELA/SPOT...		Potri.014G126700 [exp]	8.66	0.9530	RSH1.2
AT5G53170		FTSH11	FTSH protease 11 (.1)		Potri.012G000700 [exp]	9.38	0.9544
AT3G52180		ATSEX4, SEX4, A...	STARCH-EXCESS 4, DUAL-SPECIFIC...		Potri.010G232200 [exp]	9.48	0.9130

Compare expression of checked genes

Potri.014G192300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.