Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G43990 531 / 3e-178 SDG18, SUVR2 SET DOMAIN PROTEIN 18, SET-domain containing protein lysine methyltransferase family protein (.1.2.3.4.5) AT1G04050 442 / 9e-144 SDG13, SUVR1 SET DOMAIN PROTEIN 13, homolog of SU(var)3-9 1 (.1) AT3G04380 432 / 4e-143 SDG31, SUVR4 SET DOMAIN PROTEIN 31, SET-domain containing protein lysine methyltransferase family protein (.1.2) AT2G23740 126 / 2e-29 C2H2ZnF AtCZS nucleic acid binding;sequence-specific DNA binding transcription factors;zinc ion binding (.1.2) AT1G73100 112 / 2e-25 SDG19, SUVH3 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) AT2G22740 103 / 2e-22 SDG23, SUVH6 SET DOMAIN PROTEIN 23, SU(VAR)3-9 homolog 6 (.1), SU(VAR)3-9 homolog 6 (.2) AT3G03750 99 / 4e-22 SUVR3, SDG20 SET domain protein 20 (.1.2) AT2G35160 101 / 7e-22 SGD9, SUVH5 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) AT5G04940 100 / 1e-21 SUVH1 SU(VAR)3-9 homolog 1 (.1), SU(VAR)3-9 homolog 1 (.2) AT5G13960 98 / 9e-21 SDG33, KYP, SUVH4 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G257400 [exp] 1322 / 0 AT5G43990 524 / 8e-176 SET DOMAIN PROTEIN 18, SET-domain containing protein lysine methyltransferase family protein (.1.2.3.4.5) Potri.013G048100 [exp] 450 / 1e-147 AT3G04380 471 / 5e-161 SET DOMAIN PROTEIN 31, SET-domain containing protein lysine methyltransferase family protein (.1.2) Potri.009G138600 [exp] 445 / 1e-146 AT3G04380 427 / 2e-144 SET DOMAIN PROTEIN 31, SET-domain containing protein lysine methyltransferase family protein (.1.2) Potri.007G033000 [exp] 126 / 2e-29 AT2G23740 1436 / 0.0 nucleic acid binding;sequence-specific DNA binding transcription factors;zinc ion binding (.1.2) Potri.005G129800 [exp] 124 / 1e-28 AT2G23740 1468 / 0.0 nucleic acid binding;sequence-specific DNA binding transcription factors;zinc ion binding (.1.2) Potri.003G188700 [exp] 106 / 2e-23 AT1G73100 806 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) Potri.002G237950 [exp] 105 / 4e-23 AT5G13960 709 / 0.0 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) Potri.001G036800 [exp] 103 / 1e-22 AT1G73100 796 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) Potri.003G083100 [exp] 103 / 3e-22 AT2G35160 676 / 0.0 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024946 [exp] 708 / 0 AT5G43990 488 / 7e-163 SET DOMAIN PROTEIN 18, SET-domain containing protein lysine methyltransferase family protein (.1.2.3.4.5) Lus10022879 [exp] 701 / 0 AT5G43990 455 / 2e-149 SET DOMAIN PROTEIN 18, SET-domain containing protein lysine methyltransferase family protein (.1.2.3.4.5) Lus10012513 [exp] 406 / 2e-133 AT3G04380 419 / 2e-143 SET DOMAIN PROTEIN 31, SET-domain containing protein lysine methyltransferase family protein (.1.2) Lus10005476 [exp] 391 / 2e-127 AT3G04380 503 / 3e-176 SET DOMAIN PROTEIN 31, SET-domain containing protein lysine methyltransferase family protein (.1.2) Lus10022657 [exp] 385 / 1e-126 AT3G04380 412 / 2e-142 SET DOMAIN PROTEIN 31, SET-domain containing protein lysine methyltransferase family protein (.1.2) Lus10027956 [exp] 202 / 1e-60 AT3G04380 226 / 3e-73 SET DOMAIN PROTEIN 31, SET-domain containing protein lysine methyltransferase family protein (.1.2) Lus10008198 [exp] 180 / 6e-52 AT3G04380 217 / 8e-69 SET DOMAIN PROTEIN 31, SET-domain containing protein lysine methyltransferase family protein (.1.2) Lus10022878 [exp] 160 / 2e-43 AT5G43990 110 / 2e-26 SET DOMAIN PROTEIN 18, SET-domain containing protein lysine methyltransferase family protein (.1.2.3.4.5) Lus10024947 [exp] 148 / 8e-39 AT5G43990 100 / 4e-23 SET DOMAIN PROTEIN 18, SET-domain containing protein lysine methyltransferase family protein (.1.2.3.4.5) Lus10022483 [exp] 119 / 3e-27 AT2G23740 1070 / 0.0 nucleic acid binding;sequence-specific DNA binding transcription factors;zinc ion binding (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00856 [poplar] [flax] SET SET domain PF05033 [poplar] [flax] Pre-SET Pre-SET motif CL0214 [poplar] [flax] UBA PF10440 [poplar] [flax] WIYLD Ubiquitin-binding WIYLD domain
Representative CDS sequence Show only first row Show all	>Potri.014G192500.2 pacid=42762423 polypeptide=Potri.014G192500.2.p locus=Potri.014G192500 ID=Potri.014G192500.2.v4.1 annot-version=v4.1 ATGCCGACTAATCCGAGAGTTGTGAAAGCCTTTAGGGCTATGAAGGCGCTTGGAATAAGCGAAAAGCAAGTTAAACCTGTGTTGAAAAAGATGCTAAAAC TGTATGAGAAAAATTGGGAGCTAATTGAAGAGGAAAATTATAGAGCTCTTGCGGATGCCATTTTTGACGAGGAGGAGTCTAAGGTTCCTGACGAGAATGA TGATGCTACTGAGGGAACTTTTGAGGAAAAAACTCGGATTTCTAATGAACCTGAGCGGCCGTTCAAACGGTTGCGTAGAGGCCAAGATGGGCAAGGTTCC TCCCCGCCTAACAACAGCGACCTAGTGTTGGCTGGAAGTCCTTCAAGAAAGCCTAAAGTGCAGGGGAAAGTACTACCTGTTGCGAAATCCCAGCAGCAGT CTCTGGAAACGAGAAATTCACAACCCAGGCCTATTTCACTTCAGAATCCTGCTGGAAACATGAGCTCACAAACTGTTTCTCCTGGTTGTTTGGCGGTGCA GGAACACTCTAGTCAGTCTGATTTATCTGATATGGATGGAACATTGTTGTCTGATTCACTTTTGTCATGGAAGCAGCGATCATACAAGGGAAAAGAACCT TTATTACCTGCGGCTGCTCCACAAGAGAAAAGACCTACTTTAAAAGGATCATCGCAAGCAGTGCACTTCAAAGACCCCGTAGTTCAGCCAAGCGCTTTTC TCTCACCCAAACAAAAAGTGCCTCATTCTCGTGCTCTGATCAAGCCTAAAGACGAGCCATTTACTGGTGACATGCCTTTTGAAGACGCTATGCAATCTAT TGCAATTATCCGACCAGATTCTGCAAGCAAAGAACAATCTCTTATTCAAAGAGTTTCTTCACGCAAACAGCATCATCAAGAACCTCCAGCATCCCAATTT TTAGCTGGAGAAGATAACGTTCCAGTTTCATCAAGTCCGGCAAGAGATAGCTGTGAACTTGCAACCATTCCAGAAGACTCTCCGGCTAGCTTAGAGATTG CCACCTCAGCACTGGGAGAGGTGAAGATTTCTCTGAGCTGCAACTCTATGCTTGGAAGACCAGATTTTCATATGCCTAGTCAAGATGAACTTCTGCAATC AATGCAGGATAAATGTCTCCGATCTTACAAAATCCTTGACCCAAACTTTTCTGTCATGCAAATGCTGAAAGATATGTGTGAATGCTTCTTGGATTTGGCA ACTGATTCCTCTCATGAACATGAATCGCAGGAAAGGATTTTGAATGTAACACCAGCTCTTGATCTATTGAAGAAATCTGTTGGTGTTGGTGGCATTAAAG AAAATAACCATGTACCAGCCTATGTTGCAAGGGTATCAGTTGATGCTCGTCACTTTGATGAGGTGGCTGCTTTTCAAATTCCAAGACCACTACAGCCTCC GAATGTTTTGGAGGTTGTGCAGGTGAGTGAAGAGGCTATTGAAAATGGCTGTTCTGGAAGTGGCAAAGTAAATGAATTTAGAGATGCTGAGTTTGGTAGT TTGATTGTGGTTCCACAGAGTCAACTGACTCCTGATGAGTTTAGGTCCCTTCATTATCGTACTGACATCACTAAGGGAGAAGAAATGGTTGAGATTCCAT GGTTGAATGAAGTAAACAGCGAGTTTCCTCCATTTTTTAACTACATACCCCGGAATCTGATTTTTCAGAATGCTTATGTCAACTTCACTCTCTCTCAAAT TAGGGCTGAAAATTGCTGCTTGGCTTGTATTGGTAATTGTTTGTTGTCATCTACACCTTGTGTTTGCTCCAGTGACACTGAGCATGGTTTTGCATACACT TTAGAAGGCCTTGTCAAGGAGGATTTCTTAGAAGATTGTATCTCTCTGACTCGGGATCCTCAGCGACAATGCCTTTCTTATTGTAGAGATTGCCCACTGG AAAGATCAAAAAACGATGAGATATTGGAACCATGCAAGGGTCACGTGAAGAGAAAATATATAGAAGAATGTTGGAGCAAATGTGGGTGCCACAAACAATG TGGAAACAGAGTCGTGCAGCGAGGTATAAGGTGCAAGTTGCAGGTTTTCTTTACCCCTGAAGGGAAGGGGTGGGGTCTCAGAACTCTAGAAATACTACCA AAAGGTACATTTGTATGCGAGTATGTAGGGGAGATACTAACCAACAAAGAGTTGTATGAGAGGAAGATGCAAAGGACAAGTAGCAGCAAGACTGAGAAGC ATGCCTATCCAGTTCTACTTGATGCGGATTGGTGCATGAAAGGAGTTGTAAAGGATGAAGAAGCTCTGTGTTTGGATGCGACATTTTATGGAAATATTGC TAGGTTTATCAATCACAGATGTCTTGATGCAAATATGATTGAAATCCCCGTGAAGATTGAGACCCCTGATCATCATTATTATCATCTTGCTTTCTTCACA ACAAGAGGAGTGAATGCCTTAGAAGAGTTAACATGGGATTATGGGATTGATTTTGATGATACTGATCAACCTGTGGAGGTATTCCCATGCCGATGTGGCA GTAAGTTCTGCAGGAACATGAAACGTTCAAATAGATCTAATTCAGCAGCAAGATGA
AA sequence Show only first row Show all	>Potri.014G192500.2 pacid=42762423 polypeptide=Potri.014G192500.2.p locus=Potri.014G192500 ID=Potri.014G192500.2.v4.1 annot-version=v4.1 MPTNPRVVKAFRAMKALGISEKQVKPVLKKMLKLYEKNWELIEEENYRALADAIFDEEESKVPDENDDATEGTFEEKTRISNEPERPFKRLRRGQDGQGS SPPNNSDLVLAGSPSRKPKVQGKVLPVAKSQQQSLETRNSQPRPISLQNPAGNMSSQTVSPGCLAVQEHSSQSDLSDMDGTLLSDSLLSWKQRSYKGKEP LLPAAAPQEKRPTLKGSSQAVHFKDPVVQPSAFLSPKQKVPHSRALIKPKDEPFTGDMPFEDAMQSIAIIRPDSASKEQSLIQRVSSRKQHHQEPPASQF LAGEDNVPVSSSPARDSCELATIPEDSPASLEIATSALGEVKISLSCNSMLGRPDFHMPSQDELLQSMQDKCLRSYKILDPNFSVMQMLKDMCECFLDLA TDSSHEHESQERILNVTPALDLLKKSVGVGGIKENNHVPAYVARVSVDARHFDEVAAFQIPRPLQPPNVLEVVQVSEEAIENGCSGSGKVNEFRDAEFGS LIVVPQSQLTPDEFRSLHYRTDITKGEEMVEIPWLNEVNSEFPPFFNYIPRNLIFQNAYVNFTLSQIRAENCCLACIGNCLLSSTPCVCSSDTEHGFAYT LEGLVKEDFLEDCISLTRDPQRQCLSYCRDCPLERSKNDEILEPCKGHVKRKYIEECWSKCGCHKQCGNRVVQRGIRCKLQVFFTPEGKGWGLRTLEILP KGTFVCEYVGEILTNKELYERKMQRTSSSKTEKHAYPVLLDADWCMKGVVKDEEALCLDATFYGNIARFINHRCLDANMIEIPVKIETPDHHYYHLAFFT TRGVNALEELTWDYGIDFDDTDQPVEVFPCRCGSKFCRNMKRSNRSNSAAR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G43990		SDG18, SUVR2	SET DOMAIN PROTEIN 18, SET-dom...		Potri.014G192500 [exp]	0	1
AT3G18640	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Potri.005G061100 [exp]	1.00	0.8921
AT1G09060			Zinc finger, RING-type;Transcr...		Potri.013G019000 [exp]	3.16	0.8545
AT1G33050			unknown protein		Potri.001G452300 [exp]	5.74	0.8368
AT2G32700		MUM1, LUH	MUCILAGE-MODIFIED 1, LEUNIG_ho...		Potri.002G241800 [exp]	6.70	0.8539
AT1G09770	MYB	ATCDC5, AtMYBCD...	ARABIDOPSIS THALIANA MYB DOMAI...		Potri.013G046300 [exp]	10.24	0.8236
AT1G27840		ATCSA-1	Transducin/WD40 repeat-like su...		Potri.014G016100 [exp]	11.66	0.8257
AT1G60220		ULP1D, OTS1	OVERLY TOLERANT TO SALT 1, UB-...		Potri.010G040600 [exp]	13.26	0.8406
AT5G07980			dentin sialophosphoprotein-rel...		Potri.015G056200 [exp]	13.78	0.8374
AT4G38180	FAR1_related	FRS5	FAR1-related sequence 5 (.1)		Potri.012G137500 [exp]	14.07	0.8229
AT1G67580		CDKG;2	Protein kinase superfamily pro...		Potri.010G056900 [exp]	14.66	0.8470

Compare expression of checked genes

Potri.014G192500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.