Plant FIBer expression Database

Potri.014G192800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G04080 820 / 0 PRP39 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3)
AT5G46400 410 / 1e-128 ATPRP39-2 ,AT PRP39-2 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
AT1G17760 47 / 6e-05 CSTF77, ATCSTF77 ARABIDOPSIS THALIANA CLEAVAGE STIMULATION FACTOR 77, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G257100
[exp]
1251 / 0 AT1G04080 874 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3)
Potri.003G106200
[exp]
47 / 9e-05 AT1G17760 1037 / 0.0 ARABIDOPSIS THALIANA CLEAVAGE STIMULATION FACTOR 77, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10024952
[exp]
989 / 0 AT1G04080 879 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3)
Lus10022874
[exp]
967 / 0 AT1G04080 865 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3)
Lus10015257
[exp]
358 / 4e-109 AT5G46400 384 / 2e-119 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Lus10025377
[exp]
235 / 6e-66 AT5G46400 392 / 2e-122 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Lus10041477
[exp]
51 / 4e-06 AT5G41770 1161 / 0.0 crooked neck protein, putative / cell cycle protein, putative (.1)
Lus10034294
[exp]
50 / 1e-05 AT5G41770 1153 / 0.0 crooked neck protein, putative / cell cycle protein, putative (.1)
Lus10003684
[exp]
45 / 0.0003 AT1G17760 971 / 0.0 ARABIDOPSIS THALIANA CLEAVAGE STIMULATION FACTOR 77, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info
Representative CDS sequence
>Potri.014G192800.1 pacid=42763225 polypeptide=Potri.014G192800.1.p locus=Potri.014G192800 ID=Potri.014G192800.1.v4.1 annot-version=v4.1
ATGGGAGATAGTGAGACAGTAGTAACTGAACCATCTGCAGTTATGGATTATACAGCGGCTGGCTATCCTTCTACTGGCTATGCTGATGCCATTTCAAATG
TTGTTCCTGGTCCCGGTGTTTACACTGCAGAGGGTACTGGGAATTTCACTGCTTCTTTTGTTGCAGCGCAGGCAGCTTATACTGGAAATGCATATGGTAC
AGATTCTACTTCTGTTGTGCTAGATGGTCATGTAGAGGCAACACATGGGACAGAGGCAGTTGTTGGAATGGACAGTACTACTAACAATGCAGCTGTGGCA
GAAAATGCATCTATTGCGCCACCTCAAGCTTCTGGGTATGATTCAGCTGTAAATGGAAACATCGGTGCTGAAGCTGGAGTTGTGGTATCAGTTGAGAATG
GAAATGCTGGAGAGGTTGTGGGTGGAGCTGATGCTGTGCAACAGTTCGTGGATGGTTCTGTGCCAGAAATGTCAGCTGAAGAAGACCGGCTGTGGAACAT
TGTGAAGGCTAATTCTTTGGATTTTGATGCATGGACTGCCTTAATAGATGAGACAGAGAAGGTGGCTGGGGACAAGATATTGAAAATTCGAAAAGTGTAT
GATGCTTTTTTGGGTGAATTTCCATTGTGTTATGGATATTGGAAGAAGTATGCAGATCATGAAGCACGCCTTGGTTTTATGGACAAATTTGTGGAGGTCT
ATGAACGGGCTGTTCTCGGGGTCACGTACTCGGTGGACATTTGGTTGCACTATTGCATGTCTGCCATATCCATGTATGGAGATCCAGAAACCATTAGAAG
GCTTTTTGAGCGAGGATTAGCTTATGTTGGAACAGATTATCTGTCTTACCCCCTTTGGGACAAGTACATCGAATATGAAGAGGTGCATGCAGAGTGGGGC
CGTGTTGCCATGATTTATACCCGGATATTAGAGATTCCTAACAGAAAGCTGGATGATTATTTCAATAGATTTAAGGCTTTTGCTGCAAGTCGACCTTTAG
CAGAATTAAGGACTGCTGAGGAAGCAGCTGCTGCTGCTGCTGCAGCACGTACACTTCTGGAGGATGGTGGCCAAGCAGATGAGGGAGAGGTCCATCCTGA
TGCAGCTGAACTGCCTTCTAAACCTGTAAGTGCTGGCTTAGGAGAAGCAGAGGAGTTGGAGAAGTATATCGCCGTTAGAGAAGAGATATATAAGAAAGCT
AAAGAGTTCGATTCTAAGATCTCTGACTTTGAAAATGCTATTAGGAGGCCCTACTTTCATGTGCGGCCCCTTAATGTCGCAGAGCTTGAAAATTGGCATA
ACTATTTGGATATGATAGAAAGAGAGGATGACTTCAATAAGGTGGTCAAGCTATATGAAAGATGCATAATAGCATGTGCCAATTATACCGAGTATTGGAT
ACGCTATGTCTTGTGCATGGAAGCCTATGGGAATATGGATCTTGCAAATAATGCTCTCGCTCGTGCAACTCAAGTATTTGTCAAGAGACAACCAGAGATT
CACCTTTTTGCGGCGCGCTTCAAAGAGCAAAATGGGGATATACCTGGTGCTCGAGCTGCATACCGAGTTGTGCATGCTGAAATTGCCCCTGGTCTTCTTG
AAGCAATCACTAAGCATGCAAACATGGAGCATCGGTTGGGGAATCTTGAAGATGCCTTCTCCTTATATGAGCAGGCCATAGCCATTGAAAAGGGAAAAGA
GCATTCACAAGTGCTGCCAGCATTGTATGCACAATATGCCCGGTTCATATATTTGGCATCAAAAAATGTAGAGAAAGCGAGAGAGGTTCTAGTGGAAGCA
CTTGAGAATGCCCAATTTTCAAAGCCACTTCTTGAGGCCCTGATACATCTCGAGACATTTCTGCCACAGCCGAAACGAATCGATTATATTGATTCGTTGG
TTGATAACTTCATTTTGACCAGCTCGGACAGTGTCAATGCTGCTAGTGCTTCTGAGAGGGAAGAGCTGTCTTGCATTTTCTTGGAGTTTTTAGGTATCTT
TGGAGATGCTCAATCTATAAAGAAGGCTGCTGATCGGCATGCCAAGTTCTTCTTACCCCACAGTAGCAAGTCAGAATTGAAAAAGCGCCATGCAGAGGAT
TACCTTTCTTCGGATAGGGAAAAAATAGCCAAACCCTACTCTGATGCCACCTCACCCGCGCAGTCTCTGATGGGGGCATACGCAAGTGCACAAAATCAAT
GGACAGCTGGTTATGGCTTACAGCCTCAAGCCTGGCCACCAGCCACACAAGTACAGGCGCAACAGTGGACTCCAGGCTATAACCAAGCTGCATATGGTGG
TTATGGAGGCAGCTATACTAGCCCTCAAGTTCCTACATCAGGTGCACAAGGTGCTGCTTATGGTGCTTATCCTCCTACCTATCCTGCCCAGGCTTTCCCG
CAACAGAGTTACGCGCAGCCACCAGCAGCAGCATTGACTCCAGCGCAGCAGCCAGCCTCTGTTCCACAACCTTACTATGGGAGTTACTACTGA
AA sequence
>Potri.014G192800.1 pacid=42763225 polypeptide=Potri.014G192800.1.p locus=Potri.014G192800 ID=Potri.014G192800.1.v4.1 annot-version=v4.1
MGDSETVVTEPSAVMDYTAAGYPSTGYADAISNVVPGPGVYTAEGTGNFTASFVAAQAAYTGNAYGTDSTSVVLDGHVEATHGTEAVVGMDSTTNNAAVA
ENASIAPPQASGYDSAVNGNIGAEAGVVVSVENGNAGEVVGGADAVQQFVDGSVPEMSAEEDRLWNIVKANSLDFDAWTALIDETEKVAGDKILKIRKVY
DAFLGEFPLCYGYWKKYADHEARLGFMDKFVEVYERAVLGVTYSVDIWLHYCMSAISMYGDPETIRRLFERGLAYVGTDYLSYPLWDKYIEYEEVHAEWG
RVAMIYTRILEIPNRKLDDYFNRFKAFAASRPLAELRTAEEAAAAAAAARTLLEDGGQADEGEVHPDAAELPSKPVSAGLGEAEELEKYIAVREEIYKKA
KEFDSKISDFENAIRRPYFHVRPLNVAELENWHNYLDMIEREDDFNKVVKLYERCIIACANYTEYWIRYVLCMEAYGNMDLANNALARATQVFVKRQPEI
HLFAARFKEQNGDIPGARAAYRVVHAEIAPGLLEAITKHANMEHRLGNLEDAFSLYEQAIAIEKGKEHSQVLPALYAQYARFIYLASKNVEKAREVLVEA
LENAQFSKPLLEALIHLETFLPQPKRIDYIDSLVDNFILTSSDSVNAASASEREELSCIFLEFLGIFGDAQSIKKAADRHAKFFLPHSSKSELKKRHAED
YLSSDREKIAKPYSDATSPAQSLMGAYASAQNQWTAGYGLQPQAWPPATQVQAQQWTPGYNQAAYGGYGGSYTSPQVPTSGAQGAAYGAYPPTYPAQAFP
QQSYAQPPAAALTPAQQPASVPQPYYGSYY

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G04080 PRP39 Tetratricopeptide repeat (TPR)... Potri.014G192800
[exp]
0 1
AT5G62760 P-loop containing nucleoside t... Potri.015G064600
[exp]
1.73 0.8593
AT5G15640 Mitochondrial substrate carrie... Potri.008G100100
[exp]
2.00 0.8471
AT5G55100 SWAP (Suppressor-of-White-APri... Potri.001G356800
[exp]
4.00 0.8499
AT2G26400 ARD, ATARD3 acireductone dioxygenase 3 (.1... Potri.010G082101
[exp]
4.69 0.7678
AT1G30970 C2H2ZnF SUF4 suppressor of FRIGIDA4, zinc f... Potri.003G074200
[exp]
6.32 0.8279
AT1G07910 ATRNL, RNL, AtR... ARABIDOPSIS THALIANA RNA LIGAS... Potri.016G083100
[exp]
7.21 0.7346
AT4G36980 unknown protein Potri.005G138200
[exp]
9.16 0.8491
AT3G53090 UPL7 ubiquitin-protein ligase 7 (.1... Potri.016G096500
[exp]
15.42 0.7842
AT5G10790 UBP22 ubiquitin-specific protease 22... Potri.006G266100
[exp]
15.87 0.7687
AT1G05830 SDG30, ATX2 SET DOMAIN PROTEIN 30, trithor... Potri.002G232800
[exp]
17.66 0.7931

Potri.014G192800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.