Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04110 344 / 6e-114 SDD1 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) AT2G05920 219 / 2e-66 Subtilase family protein (.1) AT3G14067 192 / 2e-56 Subtilase family protein (.1) AT5G67360 191 / 7e-56 ARA12 Subtilase family protein (.1) AT3G14240 186 / 5e-54 Subtilase family protein (.1) AT5G51750 183 / 4e-53 ATSBT1.3 subtilase 1.3 (.1) AT1G01900 183 / 6e-53 SBTI1.1, ATSBT1.1 subtilase family protein (.1) AT4G34980 167 / 2e-47 SLP2 subtilisin-like serine protease 2 (.1) AT5G59810 160 / 8e-45 ATSBT5.4 Subtilase family protein (.1) AT2G04160 152 / 8e-42 AIR3 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G256300 [exp] 406 / 8e-138 AT1G04110 1020 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.003G118800 [exp] 207 / 8e-62 AT1G04110 585 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.014G074600 [exp] 204 / 1e-60 AT1G01900 788 / 0.0 subtilase family protein (.1) Potri.001G167300 [exp] 201 / 1e-59 AT3G14067 978 / 0.0 Subtilase family protein (.1) Potri.005G145300 [exp] 199 / 3e-59 AT5G67360 932 / 0.0 Subtilase family protein (.1) Potri.003G067000 [exp] 199 / 9e-59 AT3G14067 969 / 0.0 Subtilase family protein (.1) Potri.006G141200 [exp] 194 / 7e-57 AT2G05920 1103 / 0.0 Subtilase family protein (.1) Potri.003G118700 [exp] 190 / 1e-55 AT1G04110 585 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.001G163600 [exp] 190 / 2e-55 AT3G14240 1174 / 0.0 Subtilase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022866 [exp] 367 / 1e-122 AT1G04110 1075 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Lus10024960 [exp] 365 / 8e-122 AT1G04110 1054 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Lus10011537 [exp] 207 / 1e-61 AT5G67360 1117 / 0.0 Subtilase family protein (.1) Lus10036546 [exp] 207 / 2e-61 AT1G01900 822 / 0.0 subtilase family protein (.1) Lus10034900 [exp] 206 / 2e-61 AT2G05920 1107 / 0.0 Subtilase family protein (.1) Lus10033431 [exp] 206 / 2e-61 AT2G05920 1103 / 0.0 Subtilase family protein (.1) Lus10014853 [exp] 199 / 2e-60 AT5G67360 806 / 0.0 Subtilase family protein (.1) Lus10019285 [exp] 203 / 3e-60 AT5G67360 1105 / 0.0 Subtilase family protein (.1) Lus10041382 [exp] 200 / 3e-59 AT1G01900 825 / 0.0 subtilase family protein (.1) Lus10008116 [exp] 195 / 7e-59 AT3G14067 632 / 0.0 Subtilase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00082 [poplar] [flax] Peptidase_S8 Subtilase family CL0364 [poplar] [flax] Leu-IlvD PF02225 [poplar] [flax] PA PA domain
Representative CDS sequence Show only first row Show all	>Potri.014G193200.2 pacid=42762589 polypeptide=Potri.014G193200.2.p locus=Potri.014G193200 ID=Potri.014G193200.2.v4.1 annot-version=v4.1 ATGTACGTCGCGATTACAGATGGAGTTGATGTCCTCTCCCTCTCTCTGGGTGGATTTCCATTGCCACTTTTTACAGCTACCATTGCAATTGGAAGTTTTC GAGCAATGGAGCATGGAATTTCAGTTGTATGTACAGCAGGGAACAATGGCCCCATTGAAAACTCAGTTGCTAATAAAGCTCCATGGATTGCTACCGTTAG TGCAAGCACACTTCATAAGAGATTTCCAGCTTTAGTTCAAATAGATAATGGACAATTCCTTTATGGAGAATCCATGTATCCCGGGAACCAGTTATCACCC ACAAAAGAATTTGAACTAGTTTATGTAACTGGTGAGGACAATGGGAGCGAATTTTGTTTCAGAGGTTCTCTCCCAAGGGCAAAAGTTGGTGGGAAAATGG TGGTTTGTGACAGAGTTAATGGGAGGACAGAGAAAGGACCTGCAGTGAAGGAGTCTGGGGGTGCTGCAATGATCTTAACCAATACTGCGATCAATCTAGA GGAGGACTCGTTTGATGTCCATGTCTTGCCTGCAACATTAATTGGTTTTGATGAAGCACTTCGCTTGAAAGCTTACATAAACTCTACTAGTAAACCTAAA GCTCGAATTGTATTTGGAGGAACTGTTATTAGGAAATCCAGAGCACCAGCAGCAGAGCAGTTTTCAGCTAGAGGACCAAGTTACACCAACCCTTCAATCC TCAAACCAGATGTAATTGCTACTGCAGTCAACATAATTGCTGCCTGGCCTCAAAATTTAGGTAAATCCATATTTATCTCAATTTAA
AA sequence Show only first row Show all	>Potri.014G193200.2 pacid=42762589 polypeptide=Potri.014G193200.2.p locus=Potri.014G193200 ID=Potri.014G193200.2.v4.1 annot-version=v4.1 MYVAITDGVDVLSLSLGGFPLPLFTATIAIGSFRAMEHGISVVCTAGNNGPIENSVANKAPWIATVSASTLHKRFPALVQIDNGQFLYGESMYPGNQLSP TKEFELVYVTGEDNGSEFCFRGSLPRAKVGGKMVVCDRVNGRTEKGPAVKESGGAAMILTNTAINLEEDSFDVHVLPATLIGFDEALRLKAYINSTSKPK ARIVFGGTVIRKSRAPAAEQFSARGPSYTNPSILKPDVIATAVNIIAAWPQNLGKSIFISI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G04110		SDD1	STOMATAL DENSITY AND DISTRIBUT...		Potri.014G193200 [exp]	0	1
					Potri.001G190450 [exp]	4.24	0.6346
					Potri.007G009000 [exp]	4.79	0.6729
AT5G26330			Cupredoxin superfamily protein...		Potri.006G259000 [exp]	7.74	0.6294
AT1G22220		AUF2	auxin up-regulated f-box prote...		Potri.001G022100 [exp]	10.00	0.5826
AT3G57450			unknown protein		Potri.001G263404 [exp]	10.58	0.5971
AT5G13620			unknown protein		Potri.008G045000 [exp]	14.28	0.5984
AT4G22080		RHS14	root hair specific 14 (.1)		Potri.004G007300 [exp]	30.00	0.5593
AT5G47670	CCAAT	NF-YB6, L1L	"nuclear factor Y, subunit B6"...		Potri.006G005000 [exp]	30.82	0.5593
AT4G16295		SPH1	S-protein homologue 1 (.1)		Potri.004G199700 [exp]	33.91	0.5410
AT3G47870	AS2	ASL29, SCP, LBD...	SIDECAR POLLEN, ASYMMETRIC LEA...		Potri.012G072000 [exp]	38.10	0.5191	Pt-LBD27.1

Compare expression of checked genes

Potri.014G193200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.