Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20330 854 / 0 Transducin/WD40 repeat-like superfamily protein (.1) AT5G25150 87 / 2e-17 TAF5 TBP-associated factor 5 (.1) AT2G43770 76 / 1e-14 Transducin/WD40 repeat-like superfamily protein (.1) AT2G41500 61 / 1e-09 EMB2776, LIS LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) AT5G58230 59 / 7e-09 MSI1, MEE70, ATMSI1 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) AT5G67320 57 / 3e-08 HOS15 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) AT4G02730 56 / 5e-08 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT5G13480 56 / 5e-08 FY Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G64730 55 / 5e-08 Transducin/WD40 repeat-like superfamily protein (.1) AT1G29260 55 / 6e-08 PEX7, ATPEX7 ARABIDOPSIS PEROXIN 7, peroxin 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G020200 [exp] 88 / 7e-18 AT5G25150 984 / 0.0 TBP-associated factor 5 (.1) Potri.006G263400 [exp] 88 / 8e-18 AT5G25150 1018 / 0.0 TBP-associated factor 5 (.1) Potri.002G051900 [exp] 76 / 9e-15 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G148500 [exp] 70 / 9e-13 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.019G096900 [exp] 70 / 1e-12 AT2G43770 645 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G009500 [exp] 63 / 2e-10 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G050100 [exp] 62 / 7e-10 AT5G67320 645 / 0.0 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) Potri.006G045800 [exp] 60 / 5e-09 AT2G41500 614 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Potri.005G144400 [exp] 59 / 6e-09 AT5G67320 671 / 0.0 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022855 [exp] 924 / 0 AT2G20330 885 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10024967 [exp] 908 / 0 AT2G20330 871 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10024447 [exp] 89 / 4e-18 AT5G25150 1006 / 0.0 TBP-associated factor 5 (.1) Lus10007449 [exp] 86 / 3e-17 AT5G25150 957 / 0.0 TBP-associated factor 5 (.1) Lus10012230 [exp] 69 / 3e-12 AT2G43770 620 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10002860 [exp] 65 / 5e-11 AT2G43770 617 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10006916 [exp] 64 / 8e-11 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10014674 [exp] 62 / 3e-10 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10003487 [exp] 60 / 2e-09 AT3G49660 489 / 6e-176 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10039636 [exp] 59 / 5e-09 AT3G49660 502 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Potri.014G193500.6 pacid=42762691 polypeptide=Potri.014G193500.6.p locus=Potri.014G193500 ID=Potri.014G193500.6.v4.1 annot-version=v4.1 ATGGAAGAGGAGGAAGCAGAAATATACGACGGAGTTAGAGCACAGTTCCCTCTAACATTCGGCAAACAATCAAAATCTCAAACACCTCTCGAACAAATCC ATAACACCACTATCCGAAAAGCACCACCCACCTCCGCCGCCAACGCCGAAACCCAATCCTCCTCTTCTAAAGCCTGGCCCGATTCTCTCCGTCCCACACC TAAATCATCCTCCAACCCCACCCCTTCACTTGGACCGCCACCACTGCGGCCTACTGGTTCCAATTCATTCGTCGCCCATGTTTCGATTGGACCTCCTCGA CCACAAGCTCGGGGTGTAGACGACGAAGATGATGGGGAAGTTATGGTGGGGCCTCCGCGGCCTCCGCCGGGACTGGCTGCTGCTGCTGATGATGATGATG ATGAGGAGGAGGAGGAGGAGGAGGAGGATGGTGTGATGATTGGACCACTTCGTCCGCCGGAACCAGCGGATTCGGATGAGGAGGATTTTCTGTATCGGAT TCCAACGAGTAATGAGATTGTACTTGGAGGCCACTCTAAGGTTGTTTCAGCTCTTGCTGTAGATCATACTGGGTCTAGAGTTCTTTCTGGTAGTTATGAC TATACAGTTAGAATGTACGATTTTCAAGGGATGAATTCGCGTTTACAATCATTTAGGCAGCTTGAACCATCTGAAGGCCATCAAGTTCGTAATTTGAGCT GGAGTCCTTCCGCAGACCGGTTTTTATGCGTCACTGGTTCTGCTCAAGCTAAGATATTTGACCGTGATGGGCTTACACTAGGTGAGTTTGTCAAGGGGGA TATGTACATTCGTGACTTGAAGAATACAAAGGGTCACATTTCTGGATTGACTTGCGGGGAGTGGCATCCTCAAGCCAAGGAGACAATTCTAACATCATCA GAGGACGGTTCACTACGTATATGGGATGTGAATGATTTCAAAAGTCAAAAGCAGGTCATTAAACCAAAGCTTGCTCGGCCTGGAAGAGTTCCAGTTACCA CATGTGCTTGGGATCGTGAAGGAAAGCGCATTGCCGGCGGCATTGGAGATGGTTCTATACAGATATGGAGCCTTAAGCCTGGATGGGGAAGCAGGCCAGA TGTTTTTGTTGAGAAGGGTCATTCAGATGACATCACTTGCCTCAAATTTTCTAGTGATGGACAAATTTTACTCTCAAGAAGCTCTGATTGTTCACTGAAG GTTTGGGATTTGCGGCAAATGAAAGAGGCCCTTAAAGTCTTTGAGAATCTTCCAAATAACTATGCTCAAACAAATATTGCATTTAGTCCTGATGAGCAGC TTTTCTTGACTGGAACATCTTTTGAAAGGGAGAGCAAAACTGGAGGTGTATTGTGCTTTTACAACCGGGCAAAACTTGAACTTGTTTCAAGAGTTGGTAT TTCTCTGACTAGCAGTGTTGTGCAGTGTGCTTGGCATCCAAAGCTAAATCAGATCTTTGCAACAGCTGGAGATAAAAGCCGAGGAGGAACCCACGTACTA TATGATCCAACCTTCAGTGAGAGAGGAGCTCTTGTATGTGTTGCATCCGCACCCCGGAAAAAATCTTTGGATGATTTTGAGGTGCAGCCCGTCATTCACA ACCCTCATGCACTACCCTTGTTTAGAGATCAGCCAAGCCGAAAGCGTCAGCGAGAGAAAACATTGAAGGATCCCCTTAAGTCCCACAAACCTGAACTTCC AATGACAGGACCAGGTTTTGGTGGAAGAGTTGGTGCTAGTAAAGGAAGCTTATTGACTCAATATCTTCTTAAGCAAGGGGGAATGATCAAGGAGACATGG ATGGAGGAAGACCCACGAGAAGCTATATTGAAGTATGCTGATGCTGCGGAAAAAGATCCCAAATACATTGCTCCAGCATATGCGCAAACCCAGCCTGACC CAGTTTTTGCAAAGTCGGATTCCGAGGATGAAGAAAAATGA
AA sequence Show only first row Show all	>Potri.014G193500.6 pacid=42762691 polypeptide=Potri.014G193500.6.p locus=Potri.014G193500 ID=Potri.014G193500.6.v4.1 annot-version=v4.1 MEEEEAEIYDGVRAQFPLTFGKQSKSQTPLEQIHNTTIRKAPPTSAANAETQSSSSKAWPDSLRPTPKSSSNPTPSLGPPPLRPTGSNSFVAHVSIGPPR PQARGVDDEDDGEVMVGPPRPPPGLAAAADDDDDEEEEEEEEDGVMIGPLRPPEPADSDEEDFLYRIPTSNEIVLGGHSKVVSALAVDHTGSRVLSGSYD YTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPSADRFLCVTGSAQAKIFDRDGLTLGEFVKGDMYIRDLKNTKGHISGLTCGEWHPQAKETILTSS EDGSLRIWDVNDFKSQKQVIKPKLARPGRVPVTTCAWDREGKRIAGGIGDGSIQIWSLKPGWGSRPDVFVEKGHSDDITCLKFSSDGQILLSRSSDCSLK VWDLRQMKEALKVFENLPNNYAQTNIAFSPDEQLFLTGTSFERESKTGGVLCFYNRAKLELVSRVGISLTSSVVQCAWHPKLNQIFATAGDKSRGGTHVL YDPTFSERGALVCVASAPRKKSLDDFEVQPVIHNPHALPLFRDQPSRKRQREKTLKDPLKSHKPELPMTGPGFGGRVGASKGSLLTQYLLKQGGMIKETW MEEDPREAILKYADAAEKDPKYIAPAYAQTQPDPVFAKSDSEDEEK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G20330			Transducin/WD40 repeat-like su...		Potri.014G193500 [exp]	0	1
AT5G04670			Enhancer of polycomb-like tran...		Potri.008G024300 [exp]	1.41	0.9006
AT3G56860		UBA2A	UBP1-associated protein 2A (.1...		Potri.006G025600 [exp]	4.58	0.8065
AT4G22740			glycine-rich protein (.1.2)		Potri.001G117400 [exp]	4.89	0.8733
AT4G36650		ATPBRP	plant-specific TFIIB-related p...		Potri.007G027600 [exp]	6.00	0.8923
AT2G31260		ATAPG9, APG9	autophagy 9 (APG9) (.1)		Potri.002G039900 [exp]	6.24	0.8896	APG9.1
AT1G07640	DOF	OBP2, AtDof1. 1	Dof-type zinc finger DNA-bindi...		Potri.011G047500 [exp]	7.48	0.8389
AT1G11240			unknown protein		Potri.004G035200 [exp]	12.24	0.8204
AT4G15240			Protein of unknown function (D...		Potri.017G039500 [exp]	12.84	0.8269
AT1G68930			pentatricopeptide (PPR) repeat...		Potri.008G113101 [exp]	13.03	0.8152
AT5G46210		CUL4, ATCUL4	cullin4 (.1)		Potri.011G084400 [exp]	13.30	0.7799

Compare expression of checked genes

Potri.014G193500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.