Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G43940 684 / 0 PAR2, ATGSNOR1, HOT5, GSNOR, ADH2 PARAQUAT RESISTANT 2, sensitive to hot temperatures 5, S-NITROSOGLUTATHIONE REDUCTASE, ALCOHOL DEHYDROGENASE 2, GroES-like zinc-binding dehydrogenase family protein (.1.2) AT1G77120 446 / 8e-157 ADH1, ATADH, ATADH1 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) AT5G24760 397 / 2e-137 GroES-like zinc-binding dehydrogenase family protein (.1.2.3) AT1G64710 390 / 1e-134 GroES-like zinc-binding dehydrogenase family protein (.1.2) AT1G32780 376 / 5e-129 GroES-like zinc-binding dehydrogenase family protein (.1) AT5G42250 352 / 1e-119 Zinc-binding alcohol dehydrogenase family protein (.1) AT1G22430 332 / 6e-112 GroES-like zinc-binding dehydrogenase family protein (.1.2) AT1G22440 320 / 2e-107 Zinc-binding alcohol dehydrogenase family protein (.1) AT4G22110 315 / 3e-105 GroES-like zinc-binding dehydrogenase family protein (.1.2) AT5G63620 134 / 3e-35 GroES-like zinc-binding alcohol dehydrogenase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G254900 [exp] 715 / 0 AT5G43940 694 / 0.0 PARAQUAT RESISTANT 2, sensitive to hot temperatures 5, S-NITROSOGLUTATHIONE REDUCTASE, ALCOHOL DEHYDROGENASE 2, GroES-like zinc-binding dehydrogenase family protein (.1.2) Potri.007G108601 [exp] 457 / 3e-161 AT1G77120 634 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.007G108401 [exp] 457 / 4e-161 AT1G77120 630 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.007G108500 [exp] 456 / 9e-161 AT1G77120 626 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.005G060000 [exp] 455 / 2e-160 AT1G77120 658 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.007G108701 [exp] 455 / 2e-160 AT1G77120 656 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.002G072100 [exp] 452 / 2e-159 AT1G77120 645 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.005G060200 [exp] 451 / 8e-159 AT1G77120 627 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.005G060300 [exp] 449 / 4e-158 AT1G77120 626 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022853 [exp] 672 / 0 AT5G43940 700 / 0.0 PARAQUAT RESISTANT 2, sensitive to hot temperatures 5, S-NITROSOGLUTATHIONE REDUCTASE, ALCOHOL DEHYDROGENASE 2, GroES-like zinc-binding dehydrogenase family protein (.1.2) Lus10000496 [exp] 667 / 0 AT5G43940 693 / 0.0 PARAQUAT RESISTANT 2, sensitive to hot temperatures 5, S-NITROSOGLUTATHIONE REDUCTASE, ALCOHOL DEHYDROGENASE 2, GroES-like zinc-binding dehydrogenase family protein (.1.2) Lus10029759 [exp] 428 / 7e-150 AT1G77120 673 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Lus10042787 [exp] 427 / 1e-149 AT1G77120 674 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Lus10010506 [exp] 426 / 6e-149 AT1G77120 673 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Lus10034042 [exp] 423 / 9e-148 AT1G77120 672 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Lus10029757 [exp] 411 / 4e-143 AT1G77120 602 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Lus10031890 [exp] 337 / 5e-114 AT5G24760 566 / 0.0 GroES-like zinc-binding dehydrogenase family protein (.1.2.3) Lus10040457 [exp] 324 / 1e-108 AT5G42250 488 / 7e-173 Zinc-binding alcohol dehydrogenase family protein (.1) Lus10004786 [exp] 324 / 1e-108 AT1G22430 529 / 0.0 GroES-like zinc-binding dehydrogenase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF00107 [poplar] [flax] ADH_zinc_N Zinc-binding dehydrogenase CL0296 [poplar] [flax] GroES PF08240 [poplar] [flax] ADH_N Alcohol dehydrogenase GroES-like domain
Representative CDS sequence Show only first row Show all	>Potri.014G193800.1 pacid=42763674 polypeptide=Potri.014G193701.1.p locus=Potri.014G193800 ID=Potri.014G193800.1.v4.1 annot-version=v4.1 ATGGCTACTCAGGGACAGCCCATCACTTGCAAAGCTGCGGTTGCTTGGGAGGCGAACACGCCGTTGGTAATAGAGGATGTGCAGGTGGCTCCACCACAGG CCGGTGAGGTTCGAATCAGGATTCTCTTCACTGCTCTTTGCCACACTGATGCTTACACTTGGAGTGGAAAGGATCCTGAAGGTCTCTTCCCATGTATTCT TGGTCACGAGGCTGCTGGGATTGTCGAAAGCGTTGGTGAAGGCGTGACAGAGGTTCAACCAGGTGATCATGTTATCCCTTGCTACCAGGCGGAATGCCGA GAATGCAAGTTTTGCAAATCAGGGAAGACAAACCTTTGTGGAAAAGTTCGTGCAGCCACTGGTGTTGGAGTCATGATGAATGATCGTAAAACCCGATTCT CAATTAAAGGAAAACCCATCTACCATTTCATGGGAACCTCAACATTCAGCCAGTACACAGTTGTGCATGATGTTAGCGTTGCTAAGATCGACCCAGCAGC CCCTTTGGAGAAAGTTTGCCTCCTTGGCTGCGGTGTTCCTACTGGTCTTGGAGCAGTTTGGAACACTGCAAAAGTAGAAGCAGGGTCCATTGTTGCTATT TTTGGACTTGGGACGATTGGACTTGCAGTCGCGGAGGGTGCAAAAGCAGCTGGAGCTTCACGGATAATTGGCATAGATATTGACAGAAAAAAGTTTGATA GAGCAAAGGATTTCGGAGTTACTGAATTTGTGAATCCAAAGGAGCATGATGAACCAATTCAACAGCGTCTCATTGATCTCACTGATGGTGGTGTTGACTA TAGCTTCGAGTGTATCGGAAATGTTTCTGTGATGAGGGCTGCTTTGGAGTGCTGTCACAAGGGCTGGGGAACCTCCGTAATTGTGGGTGTTGCAGCATCT GGCCAGGAGATAAGCACTCGTCCTTTCCAGTTGGTGACTGGCCGTGTTTGGAAAGGAACAGCTTTTGGTGGTTTCAAGAGCCGTTCGCAGGTGCCTCTGC TTGTAGAAAAGTACATGAAAAAGGAAATTAAGATCGATGAGTACATCACCCATAAACTGACTCTTGGGGAGATGAATGAGGCATTTGATCTGCTGCACGA AGGCAGCTGCCTCCGGTGCGTGCTTGATATGCAACTCTAA
AA sequence Show only first row Show all	>Potri.014G193800.1 pacid=42763674 polypeptide=Potri.014G193701.1.p locus=Potri.014G193800 ID=Potri.014G193800.1.v4.1 annot-version=v4.1 MATQGQPITCKAAVAWEANTPLVIEDVQVAPPQAGEVRIRILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECR ECKFCKSGKTNLCGKVRAATGVGVMMNDRKTRFSIKGKPIYHFMGTSTFSQYTVVHDVSVAKIDPAAPLEKVCLLGCGVPTGLGAVWNTAKVEAGSIVAI FGLGTIGLAVAEGAKAAGASRIIGIDIDRKKFDRAKDFGVTEFVNPKEHDEPIQQRLIDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAAS GQEISTRPFQLVTGRVWKGTAFGGFKSRSQVPLLVEKYMKKEIKIDEYITHKLTLGEMNEAFDLLHEGSCLRCVLDMQL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G43940		PAR2, ATGSNOR1,...	PARAQUAT RESISTANT 2, sensitiv...		Potri.014G193800 [exp]	0	1
AT5G14780		FDH	formate dehydrogenase (.1)		Potri.014G161300 [exp]	2.00	0.9594	FDH1
AT5G60440	MADS	AGL62	AGAMOUS-like 62 (.1)		Potri.009G046100 [exp]	2.23	0.9583
AT1G68320	MYB	BW62C, BW62B, A...	myb domain protein 62 (.1)		Potri.008G122100 [exp]	5.47	0.9608
AT2G28690			Protein of unknown function (D...		Potri.009G027100 [exp]	6.48	0.9490
AT5G49450	bZIP	ATBZIP1	basic leucine-zipper 1 (.1)		Potri.010G142900 [exp]	8.48	0.9392
AT1G28480		roxy19, GRX480	Thioredoxin superfamily protei...		Potri.004G049800 [exp]	10.95	0.9298	Pt-GRX.2
					Potri.016G037000 [exp]	13.92	0.9145
AT5G60900		RLK1	receptor-like protein kinase 1...		Potri.001G014600 [exp]	19.89	0.9361
AT5G11520		YLS4, ASP3	YELLOW-LEAF-SPECIFIC GENE 4, a...		Potri.006G241600 [exp]	28.56	0.9116	AAT.2
AT4G16260			Glycosyl hydrolase superfamily...		Potri.009G050300 [exp]	32.37	0.8917

Compare expression of checked genes

Potri.014G193800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.