Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04140 904 / 0 Transducin family protein / WD-40 repeat family protein (.1.2) AT5G43930 439 / 4e-143 Transducin family protein / WD-40 repeat family protein (.1.2.3.4) AT3G49660 69 / 2e-12 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT1G61210 61 / 3e-09 DWA3 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) AT4G02730 59 / 6e-09 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT5G08390 55 / 2e-07 Transducin/WD40 repeat-like superfamily protein (.1) AT1G11160 55 / 2e-07 Transducin/WD40 repeat-like superfamily protein (.1) AT5G25150 54 / 3e-07 TAF5 TBP-associated factor 5 (.1) AT5G16750 54 / 3e-07 TOZ TORMOZEMBRYO DEFECTIVE, Transducin family protein / WD-40 repeat family protein (.1) AT5G23430 54 / 4e-07 Transducin/WD40 repeat-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G254700 [exp] 1341 / 0 AT1G04140 905 / 0.0 Transducin family protein / WD-40 repeat family protein (.1.2) Potri.002G051900 [exp] 65 / 5e-11 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G148500 [exp] 64 / 1e-10 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G009500 [exp] 63 / 3e-10 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.011G045500 [exp] 61 / 4e-09 AT1G61210 723 / 0.0 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.010G255400 [exp] 57 / 5e-08 AT5G08390 927 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.018G020200 [exp] 57 / 5e-08 AT5G25150 984 / 0.0 TBP-associated factor 5 (.1) Potri.008G002300 [exp] 57 / 6e-08 AT5G08390 1006 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.006G263400 [exp] 56 / 1e-07 AT5G25150 1018 / 0.0 TBP-associated factor 5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000495 [exp] 1042 / 0 AT1G04140 914 / 0.0 Transducin family protein / WD-40 repeat family protein (.1.2) Lus10022852 [exp] 555 / 0 AT1G04140 434 / 2e-142 Transducin family protein / WD-40 repeat family protein (.1.2) Lus10006916 [exp] 62 / 6e-10 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10014674 [exp] 62 / 7e-10 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10003487 [exp] 61 / 1e-09 AT3G49660 489 / 6e-176 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10011224 [exp] 62 / 2e-09 AT1G11160 665 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10018458 [exp] 62 / 2e-09 AT1G11160 668 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10039636 [exp] 61 / 2e-09 AT3G49660 502 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10024447 [exp] 61 / 4e-09 AT5G25150 1006 / 0.0 TBP-associated factor 5 (.1) Lus10004167 [exp] 57 / 4e-08 AT2G41500 708 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Potri.014G193900.4 pacid=42764366 polypeptide=Potri.014G193900.4.p locus=Potri.014G193900 ID=Potri.014G193900.4.v4.1 annot-version=v4.1 ATGACCCCAGTTTCCTTGCCGCTGGATCGAAATCCTCCCCTCAATCCTCCTCTTCTTAGTGGTAGAAACGCCTTGTGTTTGTTAGTGCAGAGAGAGATTT GTCCTAGAACTAAACACACGCCAAAAAGGCGGTGGGGAGAAGCTTCGCAATGGAATTATAATTCTTCATCCGTGCCGAAAACTGAACCAGCTAGAGATGC GAAACGCGGTCTTATTTCATGGGCTGAGGCTGAGTCGTTGCGGCATCTATCGGCGCAGTATTGCCCACTGGTGCCTCCTCCGAGGTCGACTATAGCAGCA GCATTTAGTCCTGATGGAAAAACACTCGCTTCTACGCATGGTGATCACACAGTGAAGATAATCGATTGCCAAACTGGAATCTGCTTAAAGGTGTTGATGG GTCATCGGAGGACGCCTTGGGTGGTCAGGTTCCACCCACTGCATCCAGAAATTCTTGCAAGTGGAAGCTTGGATCATGAAGTTCGCTTATGGGATGCAAA CACATCAGAGTGTATAGGATCCCGTGATTTCTATCGTCCTATTGCTTCCATTGCTTTCCATGCAGAAGGAGAATTGCTTGCTGTTGCATCAGGTCACAAG TTGTACATATGGCACTACAATAAGAGAGGGGAGGCGTCTTCGCCAACTATTGTATTGAAGACTAGGCGCTCTCTTCGAGCAGTGCATTTTCACCCGCACG GTGCTCCATTTCTCTTGACTGCTGAGGTCAATGATCTTGACTCTTCAGATTCTTCTATGACACGGGCAACATCTCCAGGTTACCTGAGATATCCTCCTCC TGCTGTTTTTGTCACAAATGGTCAGTCTGGTGATTGTGTTAGCTTGGCTTCTGAACTACCACTTGTGTCCTTGCCTTTCTTGTTCGTGCCTTCATTTTCT TTAGATGATAGTAGAATAGATGCTAATAGACTTGTCACTTCAAGTACAATGCAAGTGGAGTCCTCTACTTCAATGCAGCTTCAAATGGATACAAATGCAA CAGACAGATATGTTCCCTTAGTGTCTCCCATGGAGACATTTCCTGCAGTCCCTTCTAGTTCATATACCAGTGCAGAAGGTATAGTAAATAATTCTTTCCC TTCTGGAATGGGAGGTGGAGTTTCTAACACCAGAGAAGACGCGATGGAGACTGATGAAATGCCGCCTGTAGGGGGGAACCCTCAAGGAAAATCAGCTCAT CTAGAGATGCTTGGTGTTGGTAATAGTGCAATGGATGGAGTACCTGCAAATACTTCAATTAGGCAGCAGTCCACTGATTTTGGGCAACTTCAGCAGATTC TACCCTCTAGAGACTCCACGTGGTGGGAGTTACCCTTTTTGCAGGGATGGTTAATGGGTCAGAGCCAAGCTGGTGGACCCTCGACAGTTCCTCTTAGTAG TGGTAGTCGTGAACGTTCAGCCCAGTATATTGGTCCTTCCTCACTGACATCTTATCTATCTACTCAGAATGTGGAAGCTGCAGTGGCTTCTTTGGCAATG CCTGGCAGCACCAGCATCTCCGGGGTCTCTGGGAGATCTGGCTCTCGGCCTCGCATTTCACGCTCCCGGTTCTTTGTGCCTGAATCCAGGGAAAGTATGG CTCCCATTAATATGCGACATGAAGGTAGTGATAATCAGCCCATATTTAATAGAATCCAGTCTGAGATTGCCACGTCATTGGAAGCTGCAGCTGCTGCAGA GTTACCATGCACTGTAAAGCTTAGAGTGTGGTCTCATGACATAAAACATCCTTGCGCTCCACTCAATGCTGACAAATGTCGCTTAACCATACCTCATGCC GTCCTTTGTAGTGAAATGGGCGCTCATTTTTCACCATGCGGAAGATATTTAGCTGCCTGTGTTGCTTGTATGCTGCCCCATATGGAAGCTGATCCCGGTT TACAAACGCTAGTCCATCAAGATGCTGGGGCTGCTACTTCCCCTACTAGACACCCAATATCAGCACACCAAGTAGTGTACGAGCTTCGCATATATTCCCT GGAGGAGGCAACCTTTGGTTCAGTGCTTGTGTCACGTGCAATTAGAGCTGCTCATTGTTTGACTTCAATCCAGTTCTCACCAATGTCGGAGCACATTTTA CTGGCTTATGGTCGACGTCATGGCTCCCTTCTAAAAAGCATTGTCATTGATGGGGAAACGACAACACCTATTTATACAGTTCTGGAGGTTTACAGAGTTT CGGATATGGAACTTGTGAGAGTGCTTCCTAGCGCAGAGGATGAGGTCAATGTTGCTTGTTTTCATCCCTTTGCCGGAGGAGGTCTTGTCTATGGAACCAA GGAAGGGAAACTTAGAGTCCTCAAGTATGATGGTGTCCATGGTGTTAATTGTACCAGACCAAATCACTTTCCTGAAGAGAACTTGACTGAGGTCCAGACA TATGCTCTAGAAGGTTAA
AA sequence Show only first row Show all	>Potri.014G193900.4 pacid=42764366 polypeptide=Potri.014G193900.4.p locus=Potri.014G193900 ID=Potri.014G193900.4.v4.1 annot-version=v4.1 MTPVSLPLDRNPPLNPPLLSGRNALCLLVQREICPRTKHTPKRRWGEASQWNYNSSSVPKTEPARDAKRGLISWAEAESLRHLSAQYCPLVPPPRSTIAA AFSPDGKTLASTHGDHTVKIIDCQTGICLKVLMGHRRTPWVVRFHPLHPEILASGSLDHEVRLWDANTSECIGSRDFYRPIASIAFHAEGELLAVASGHK LYIWHYNKRGEASSPTIVLKTRRSLRAVHFHPHGAPFLLTAEVNDLDSSDSSMTRATSPGYLRYPPPAVFVTNGQSGDCVSLASELPLVSLPFLFVPSFS LDDSRIDANRLVTSSTMQVESSTSMQLQMDTNATDRYVPLVSPMETFPAVPSSSYTSAEGIVNNSFPSGMGGGVSNTREDAMETDEMPPVGGNPQGKSAH LEMLGVGNSAMDGVPANTSIRQQSTDFGQLQQILPSRDSTWWELPFLQGWLMGQSQAGGPSTVPLSSGSRERSAQYIGPSSLTSYLSTQNVEAAVASLAM PGSTSISGVSGRSGSRPRISRSRFFVPESRESMAPINMRHEGSDNQPIFNRIQSEIATSLEAAAAAELPCTVKLRVWSHDIKHPCAPLNADKCRLTIPHA VLCSEMGAHFSPCGRYLAACVACMLPHMEADPGLQTLVHQDAGAATSPTRHPISAHQVVYELRIYSLEEATFGSVLVSRAIRAAHCLTSIQFSPMSEHIL LAYGRRHGSLLKSIVIDGETTTPIYTVLEVYRVSDMELVRVLPSAEDEVNVACFHPFAGGGLVYGTKEGKLRVLKYDGVHGVNCTRPNHFPEENLTEVQT YALEG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G04140			Transducin family protein / WD...		Potri.014G193900 [exp]	0	1
AT2G28540			RNA binding (RRM/RBD/RNP motif...		Potri.016G084700 [exp]	3.00	0.7384
AT5G35930			AMP-dependent synthetase and l...		Potri.019G043800 [exp]	10.29	0.7052
AT5G39940			FAD/NAD(P)-binding oxidoreduct...		Potri.004G130000 [exp]	12.96	0.6525
AT3G06290		AtSAC3B	yeast Sac3 homolog B, SAC3/GAN...		Potri.010G028200 [exp]	16.97	0.6908
AT5G04360		ATPU1 ,ATLDA	PULLULANASE 1, limit dextrinas...		Potri.010G229300 [exp]	18.16	0.6204
AT5G49430			WD40/YVTN repeat-like-containi...		Potri.008G106800 [exp]	23.36	0.6776
AT1G05830		SDG30, ATX2	SET DOMAIN PROTEIN 30, trithor...		Potri.002G232800 [exp]	27.92	0.6918
AT2G36810			ARM repeat superfamily protein...		Potri.006G120800 [exp]	28.61	0.6672
AT5G01270		CPL2, ATCPL2	carboxyl-terminal domain (ctd)...		Potri.016G114600 [exp]	32.46	0.6179
AT4G17140			pleckstrin homology (PH) domai...		Potri.001G148800 [exp]	34.24	0.6498

Compare expression of checked genes

Potri.014G193900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.