Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G43920 698 / 0 transducin family protein / WD-40 repeat family protein (.1) AT5G08560 432 / 4e-146 transducin family protein / WD-40 repeat family protein (.1.2) AT3G49660 112 / 2e-27 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT4G02730 104 / 2e-24 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT5G64730 92 / 1e-20 Transducin/WD40 repeat-like superfamily protein (.1) AT2G43770 79 / 7e-16 Transducin/WD40 repeat-like superfamily protein (.1) AT5G25150 76 / 2e-14 TAF5 TBP-associated factor 5 (.1) AT5G52820 76 / 2e-14 WD-40 repeat family protein / notchless protein, putative (.1) AT1G10580 73 / 2e-13 Transducin/WD40 repeat-like superfamily protein (.1) AT5G08390 72 / 4e-13 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G206600 [exp] 434 / 3e-147 AT5G08560 736 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Potri.002G055800 [exp] 429 / 3e-145 AT5G08560 716 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Potri.008G002700 [exp] 384 / 4e-128 AT5G08560 616 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Potri.010G254300 [exp] 342 / 5e-112 AT5G08560 502 / 6e-174 transducin family protein / WD-40 repeat family protein (.1.2) Potri.002G051900 [exp] 115 / 3e-28 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G148500 [exp] 108 / 3e-26 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G009500 [exp] 98 / 2e-22 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.001G306500 [exp] 86 / 2e-18 AT5G64730 489 / 2e-176 Transducin/WD40 repeat-like superfamily protein (.1) Potri.019G096900 [exp] 81 / 2e-16 AT2G43770 645 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022847 [exp] 604 / 0 AT5G43920 550 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Lus10011916 [exp] 602 / 0 AT5G43920 557 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Lus10001411 [exp] 420 / 5e-142 AT5G08560 695 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Lus10001046 [exp] 419 / 4e-141 AT5G08560 713 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Lus10001410 [exp] 410 / 1e-137 AT5G08560 694 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Lus10001045 [exp] 409 / 3e-137 AT5G08560 694 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Lus10003487 [exp] 120 / 3e-30 AT3G49660 489 / 6e-176 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10039636 [exp] 119 / 1e-29 AT3G49660 502 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10014674 [exp] 101 / 1e-23 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10006916 [exp] 100 / 3e-23 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Potri.014G194100.4 pacid=42762285 polypeptide=Potri.014G194100.4.p locus=Potri.014G194100 ID=Potri.014G194100.4.v4.1 annot-version=v4.1 ATGGAGAATTCACCTACAACAATCGGCTCAAAAGGTTTGATAAAGCAGCATGAATTTGTAAGGGTTATAATTCAAAGCCTTTATTCTTTGGGCTATAGAA AGTCAGGTTCTTGTCTTGAATCGGAATCTGGGGTTTCATACAAATCTATGAATCTTGAGTTGCTGGAATCACAAATATTGGAAGGAGATTGGGATGGCTG CATAAATACCCTTTGTGCTATTCAGGAGTTGGCGGATGAAACGAGAGCATCGGTGTTGTTTCTGGTGTTTAAGCAGTGTTTGTTAGAATATTTAATTGGT GGCGATGATACTTTAGCTCTTTCTGTTTTGCGGAACCAGGTTCCTGCATTACGAATGGGCAAGGAGAATGTCCATAATCTTGCTTATAGTATAATTTGCT TGAAGGAGATGGAATTGAGTAAGGCAGATGACAATGTCATCCACGGCCAGCGGAAAAACCTGCTCACAGAGTTGGGAACATTGCTTCCTCCACCAACTGT GCTGCCTGAAAGAAGGTTAGAACATCTGGTTGAAACTGCTATTACAGCCCAAATTGATTCATGTGATTATCACAATTCAGTTGAGCCAATTTCACTTTAT GAGGACCATAACTGCTCAAGAGACCAGTTTCCCACAGAGACCATACAGACGTTGACTGAGCATGAGAATGAAGTTTGGTTTGTTCAATTCTCTAATAATG GGGAGTACTTAGCTTCTTCTTCAAGTGACTGCACAGCCATCATATGGAAGGTACTGGAAGATGGGAGGCTGTCATTTAAACACATGCTAAGAAGCCATCT AACCCCGGTATCCTTTGTAGCATGGAGCCCTGATGATACAAAGTTGCTAACGTGTGGAAATGTGGAAGTTCTCAAGTTGTGGGATGTGGAAACAGGTACA TGCAAGCATACTTTTGGGGATCATGGCTTCGTTGTCAGTTCATGTGCTTGGTTTCCCGACTCAAAGCGATTTGTGTGTGGCAGTTCTGACCCTGAAAAAG GCATCTGCATGTGGGACTGTGATGGCAACGAGATAAAAGCATGGAGGGGCACAAGGATGCCTAAGGTTTTGGATCTTGCTGTCACACCAGATGGGGAAAA TCTGATCAGTGTAATGTCAGATTTAGAAATTCGGATATTAAATGTCAGGACAAATGCTGAACAGGTCATCCCAGAAGAGCAACCAATTACTTCCCTTTCA GTTTCCGCTGATAGCAAGTTCTTTATTGTCAATCTTAATAGCCAAGAGATTCATTTGTGGGATGTTGCGGGAAAATGGAAGAAACCATTGAAATATATAG GCCACCAGCAACACAAGTATGTGATAAGATCCTGCTTTGGTGGATTGGATAGCTCATTCATTGCCAGTGGTAGCGAGAATTCACAGGTTTACATCTGGAA TCGGCGGAACTCAAGGCCAATCGAGGTTTTGTCTGGCCATTTAATGACAGTGAACTGTGTCTGCTGGAACCCTAAAAGGCATCAAATGCTGGCTTCAGCT AGTGACGACCATACCATCCGTATATGGGGACCAAGCCGATCCAAGAACATACAGCGTTAG
AA sequence Show only first row Show all	>Potri.014G194100.4 pacid=42762285 polypeptide=Potri.014G194100.4.p locus=Potri.014G194100 ID=Potri.014G194100.4.v4.1 annot-version=v4.1 MENSPTTIGSKGLIKQHEFVRVIIQSLYSLGYRKSGSCLESESGVSYKSMNLELLESQILEGDWDGCINTLCAIQELADETRASVLFLVFKQCLLEYLIG GDDTLALSVLRNQVPALRMGKENVHNLAYSIICLKEMELSKADDNVIHGQRKNLLTELGTLLPPPTVLPERRLEHLVETAITAQIDSCDYHNSVEPISLY EDHNCSRDQFPTETIQTLTEHENEVWFVQFSNNGEYLASSSSDCTAIIWKVLEDGRLSFKHMLRSHLTPVSFVAWSPDDTKLLTCGNVEVLKLWDVETGT CKHTFGDHGFVVSSCAWFPDSKRFVCGSSDPEKGICMWDCDGNEIKAWRGTRMPKVLDLAVTPDGENLISVMSDLEIRILNVRTNAEQVIPEEQPITSLS VSADSKFFIVNLNSQEIHLWDVAGKWKKPLKYIGHQQHKYVIRSCFGGLDSSFIASGSENSQVYIWNRRNSRPIEVLSGHLMTVNCVCWNPKRHQMLASA SDDHTIRIWGPSRSKNIQR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G43920			transducin family protein / WD...		Potri.014G194100 [exp]	0	1
AT1G43850		SEU	SEUSS transcriptional co-regul...		Potri.005G186900 [exp]	1.41	0.9161
AT1G74120			Mitochondrial transcription te...		Potri.018G051600 [exp]	3.74	0.8796
AT4G25540		ATMSH3, MSH3	homolog of DNA mismatch repair...		Potri.015G142900 [exp]	8.06	0.8731
AT5G16270		SYN4, ATRAD21.3	ARABIDOPSIS HOMOLOG OF RAD21 3...		Potri.008G078500 [exp]	10.67	0.8755
AT1G72390			unknown protein		Potri.001G165800 [exp]	11.66	0.8741
AT5G66520			Tetratricopeptide repeat (TPR)...		Potri.008G003600 [exp]	17.32	0.8692
AT2G44710			RNA-binding (RRM/RBD/RNP motif...		Potri.005G116400 [exp]	19.74	0.8480
AT3G09100			mRNA capping enzyme family pro...		Potri.006G096000 [exp]	20.19	0.8542
AT1G80150			Tetratricopeptide repeat (TPR)...		Potri.001G171300 [exp]	20.49	0.8556
AT4G04885		PCFS4	PCF11P-similar protein 4 (.1)		Potri.011G024800 [exp]	20.83	0.8635

Compare expression of checked genes

Potri.014G194100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.