Plant FIBer expression Database

Potri.014G194201 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.014G194201.1 pacid=42762845 polypeptide=Potri.014G194201.1.p locus=Potri.014G194201 ID=Potri.014G194201.1.v4.1 annot-version=v4.1
ATGCTGCTCTCACCTTCGACATTTCCTAATGCTTCTTCTTCTTCATCTCTGAGCTCTCTCTCTCTCCCCCTCTCACTCTCTCTCCTTTCCTCCTCCACTA
AGTCAGTTAAGGATGCGGAGCGGCAACGGTGGATTCCCTGGCGGCAGTGGCTTCTTTATCCTAGTTCAAGGAGGTGTAAATGCAGGGGATCGATGCTAGC
TGCTCGTTTGGGTTTAAATCCGAGGCTCATTTCTAAGGTACTCTATTGGACTTGA
AA sequence
>Potri.014G194201.1 pacid=42762845 polypeptide=Potri.014G194201.1.p locus=Potri.014G194201 ID=Potri.014G194201.1.v4.1 annot-version=v4.1
MLLSPSTFPNASSSSSLSSLSLPLSLSLLSSSTKSVKDAERQRWIPWRQWLLYPSSRRCKCRGSMLAARLGLNPRLISKVLYWT

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.014G194201
[exp]
0 1
AT1G09850 XBCP3 xylem bark cysteine peptidase ... Potri.011G066800
[exp]
5.56 0.8253
AT5G64860 DPE1 disproportionating enzyme (.1) Potri.007G081400
[exp]
9.16 0.7624 DPE1.1
AT1G26770 ATHEXPALPHA1.1,... ARABIDOPSIS THALIANA EXPANSIN ... Potri.017G085300
[exp]
11.22 0.7945 PtEXPA9,EXP2.7
AT2G22900 Galactosyl transferase GMA12/M... Potri.014G006100
[exp]
23.66 0.7679 GT6.2
AT2G03550 alpha/beta-Hydrolases superfam... Potri.009G105100
[exp]
23.66 0.7385
AT5G22740 ATCSLA2, ATCSLA... CELLULOSE SYNTHASE-LIKE A 2, A... Potri.009G149700
[exp]
24.18 0.7852 ATCSLA02.1
AT1G17180 ATGSTU25 glutathione S-transferase TAU ... Potri.011G140501
[exp]
24.37 0.7695
AT1G80530 Major facilitator superfamily ... Potri.003G012300
[exp]
28.35 0.6816
AT1G64890 Major facilitator superfamily ... Potri.013G076300
[exp]
33.48 0.6863
AT5G10610 CYP81K1 "cytochrome P450, family 81, s... Potri.017G028100
[exp]
35.00 0.7699

Potri.014G194201 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.