Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28740 301 / 4e-101 unknown protein AT1G02910 93 / 6e-21 LPA1 LOW PSII ACCUMULATION1, tetratricopeptide repeat (TPR)-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G206300 [exp] 100 / 3e-23 AT1G02910 615 / 0.0 LOW PSII ACCUMULATION1, tetratricopeptide repeat (TPR)-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011914 [exp] 345 / 8e-118 AT4G28740 374 / 5e-129 unknown protein Lus10022845 [exp] 238 / 4e-79 AT4G28740 206 / 8e-67 unknown protein Lus10010280 [exp] 93 / 7e-21 AT1G02910 610 / 0.0 LOW PSII ACCUMULATION1, tetratricopeptide repeat (TPR)-containing protein (.1) Lus10036345 [exp] 93 / 9e-21 AT1G02910 620 / 0.0 LOW PSII ACCUMULATION1, tetratricopeptide repeat (TPR)-containing protein (.1) Lus10019188 [exp] 47 / 2e-05 AT3G14630 158 / 5e-41 "cytochrome P450, family 72, subfamily A, polypeptide 9", cytochrome P450, family 72, subfamily A, polypeptide 9 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11998 [poplar] [flax] DUF3493 Low psii accumulation1 / Rep27
Representative CDS sequence Show only first row Show all	>Potri.014G194500.2 pacid=42762984 polypeptide=Potri.014G194500.2.p locus=Potri.014G194500 ID=Potri.014G194500.2.v4.1 annot-version=v4.1 ATGGCTTCTTTCATGGGTCTCTTTCCCTACAACATGGCTGGACCCCTTAACTTCTATCATCACAACAACTACAAATACCAAATTGGCAATCACAGAAACA GTGCACTGTTCTCTTGTATTGATCATAATTTAACACAACACATGCTAAGCTGCAAGAGGCAAAGTTGTTCCACTTCCACCATCACCTGCTCTGCTGCCAA CAAACCCTCTCCGTCTACTGAAGTCAGCTCTACAGCCAAGATAAGGAGTGAAGTTCTATCTCCATTTCGGACTGTCCGGATGTTTTTCTACCTAGCTTTT CTTGCAAGTGGTGCTTTGGGAGGATTAATAGCAACCACACGACTGATTGCTGCTCTAGCAAATCCATCAAGAGCAGCTGAAGTACCTGAGATACTGAAAG GTCTGGGCATAGACATTGGAGCAGCAGCTATCTTCGCATTCCTATATTACAGGGAGAACAAAGCTAAAAATGTACAACTGGCTAGGCTGTCAAGAGAGGA AAACCTTTCAAATCTTAAGCTCCGTGTGGATGAAAAGAAGATCATTTCTGTGAGCTCTTTGAGGGGTGTTGCTCGTCTTGTAATCTGTGCTGGCCCTGCA CCTTTCATTTTAGAATCTTTTAAACTTAGTGAGCCTTTCACTCAGAGCCTTTTGGATAGAGGGGTGCTTGTGGTTCCATTTGCTTCAAATGGGAATTTAC CTAGTTTTGAGTTTGACGAGGGTGAGGAGATGAAGGAGCTTACCACCAAGAGGAAGAGACTCTGGCAGTTGGCTCCTATCTATGTTTCTGAATGGTCCAA CTGGTTAGATGAACAGAAGAAGCTGGCTGGCGTCTCCCCTGAATCTCCTGTGTATTTGTCTCTGCGCATGGATGGCCGTGTCCGTGGAAGTGGTGTTGGT TATCCCCCTTGGAATGCTTTTGTCGCCCAACTACCACCATCAAAGGGAATGTGGTCAGGTCTTCTTGATGGCATGGATGGAAGAGTTCTTTAG
AA sequence Show only first row Show all	>Potri.014G194500.2 pacid=42762984 polypeptide=Potri.014G194500.2.p locus=Potri.014G194500 ID=Potri.014G194500.2.v4.1 annot-version=v4.1 MASFMGLFPYNMAGPLNFYHHNNYKYQIGNHRNSALFSCIDHNLTQHMLSCKRQSCSTSTITCSAANKPSPSTEVSSTAKIRSEVLSPFRTVRMFFYLAF LASGALGGLIATTRLIAALANPSRAAEVPEILKGLGIDIGAAAIFAFLYYRENKAKNVQLARLSREENLSNLKLRVDEKKIISVSSLRGVARLVICAGPA PFILESFKLSEPFTQSLLDRGVLVVPFASNGNLPSFEFDEGEEMKELTTKRKRLWQLAPIYVSEWSNWLDEQKKLAGVSPESPVYLSLRMDGRVRGSGVG YPPWNAFVAQLPPSKGMWSGLLDGMDGRVL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G28740			unknown protein		Potri.014G194500 [exp]	0	1
AT1G55480		ZKT	protein containing PDZ domain,...		Potri.003G222200 [exp]	2.44	0.9789
AT5G19850			alpha/beta-Hydrolases superfam...		Potri.003G219700 [exp]	2.82	0.9698
AT5G01410		PDX1, ATPDX1.3,...	REDUCED SUGAR RESPONSE 4, ARAB...		Potri.016G116400 [exp]	3.16	0.9695	Pt-PDX1.2
AT5G35970			P-loop containing nucleoside t...		Potri.013G073900 [exp]	4.69	0.9639
AT3G01060			unknown protein		Potri.017G090100 [exp]	4.89	0.9728
AT2G24390			AIG2-like (avirulence induced ...		Potri.018G003000 [exp]	5.09	0.9506
AT4G29670		ACHT2	atypical CYS HIS rich thiored...		Potri.006G150700 [exp]	6.48	0.9669
AT4G03280		PGR1, PETC	PROTON GRADIENT REGULATION 1, ...		Potri.019G118500 [exp]	6.63	0.9736	PETC.1
AT3G24190			Protein kinase superfamily pro...		Potri.001G050700 [exp]	6.70	0.9643
AT5G60540		EMB2407, ATPDX2...	EMBRYO DEFECTIVE 2407, pyridox...		Potri.009G012700 [exp]	9.79	0.9229

Compare expression of checked genes

Potri.014G194500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.