Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28760 583 / 0 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2) AT2G20240 453 / 3e-148 Protein of unknown function (DUF3741) (.1) AT5G43880 323 / 2e-97 Protein of unknown function (DUF3741) (.1) AT3G53540 105 / 5e-23 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G253600 [exp] 1274 / 0 AT4G28760 752 / 0.0 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2) Potri.006G213700 [exp] 170 / 2e-43 AT3G53540 433 / 1e-136 unknown protein Potri.016G080200 [exp] 126 / 2e-29 AT3G53540 234 / 1e-64 unknown protein Potri.010G211700 [exp] 70 / 6e-12 AT2G39435 155 / 2e-40 Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related (.1.2) Potri.001G103400 [exp] 61 / 5e-09 AT2G45900 86 / 5e-17 Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related (.1) Potri.015G135200 [exp] 56 / 1e-07 AT5G62170 239 / 2e-68 unknown protein Potri.012G132900 [exp] 54 / 4e-07 AT5G62170 247 / 1e-71 unknown protein Potri.014G084600 [exp] 47 / 9e-05 AT4G00440 395 / 4e-124 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2), Protein of unknown function (DUF3741) (.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011911 [exp] 586 / 0 AT4G28760 535 / 9e-179 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2) Lus10022843 [exp] 380 / 2e-121 AT4G28760 369 / 2e-116 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2) Lus10022842 [exp] 186 / 1e-52 AT4G28760 198 / 2e-57 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2) Lus10024434 [exp] 96 / 8e-20 AT3G53540 449 / 2e-144 unknown protein Lus10025296 [exp] 91 / 3e-18 AT3G53540 456 / 7e-146 unknown protein Lus10002008 [exp] 53 / 9e-07 AT1G63670 100 / 2e-21 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2), Protein of unknown function (DUF3741) (.3) Lus10035490 [exp] 53 / 1e-06 AT1G63670 100 / 1e-21 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2), Protein of unknown function (DUF3741) (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12552 [poplar] [flax] DUF3741 Protein of unknown function (DUF3741) PF14309 [poplar] [flax] DUF4378 Domain of unknown function (DUF4378)
Representative CDS sequence Show only first row Show all	>Potri.014G194600.8 pacid=42762310 polypeptide=Potri.014G194600.8.p locus=Potri.014G194600 ID=Potri.014G194600.8.v4.1 annot-version=v4.1 ATGGGACTTGATACCCTTCCTCATCAGCAGCCTATTGCAGCTACACGAAGAAGCCACTCTAGAGGTTATTCAAGGTGTTCTTTAAGTCACTCAGGGATAC TTGTGGAGTCTTGGGATGAAGATCATAGTTTTTTGGACAAGCAGAGGCCTTGTGAAGGCCACCTATGCCAGGAGCAAAGTGAATACAAAGATGTCTATAA AATCTGGCAGCAATCCAAAAACACAATTCTGAGAGATAGTTCACCTCAGAAAGGAAATCACAATGGAAGCAAAATGATGGCTCTTGTTCGCCTGAAGTTT ATGGAAGCAAAACGTCTGTCAACAGATGAAAAAGGCTGCCAGTCCAAGGAATTCCAAGATGCACTGGAAGGTTCCAATAAAGATTTATTCCTCAAGTTTC TGCAGGAACCAAATTCATTGTTCTCTCAACATCTGCATGATCTGCAATGTATGCCTCCATCTCCCGAGACAAGGCGCATCACTGTTCTGAGGCCTTCGAA GGAAAGATTTGCAGGATCAGGGAAGAAGAGTGATAAACTGACAAAGAAACAGTCCCATACTGGTCAAGCTATTGGGTGGGAAAAAAGTAATCTTGGATAT TCTTCTGCCTTTTCCAATCAGAAGATTGATGAATATGCTGCTCAACCCACTCGAATAGTAGTATTGAAGCCTAGCCAAAGGAAGATCCATGACGTTAAGG CTTTGGTTTCACCACCATCATCGCCACCAAGAATGTTGCATTGTGAAGATTTTTATGATGAACCTGAAGATTTTGAGGGTCAAGAATCAAGAGAGGTGGC AAAGAAAATCACTCGGAATATGCGTGAAAACCTGATGGGCCACCAGAGAAATGGAACTCGTCTTTCTTCTGTGTATTCCAATGGCTATATTGGTGATGAT AGTTCAGTTAACAAATCAGAAAATGACTGTGCAGTGGGAAATCTCAGTGATACAGAAATCTTGTCACTGACGTCTAGGCATTTATGGGATTACACCAATA GGTTTGATAACCCCTATTCCTCTTCCTCCTTCAGCTGTGCATCTTGTTCTCCAGAGTCATCTGTTTGCAGAGAAGCAAAGAAGCAACTTTCTAAAAGATG GGTCATGATGGCATTGAATGGGAGAGCTCAAGAGCAAAAAACTGCCCGGAGAATCTCCAGCACTTTGGGAGAGATGCTTGCAGTTTCAGATGCAAAGAAA TTTGTGAGATCTAAGGAAGAGGTTAGTAATAAGGAACAAGAACCAAGAGGATCAACCTCTTGCATCCCTAGTCATTTAAATAAGGAAGACAGCACACCTG ATTCTCCTAGAAGTCTTCTAAGGTCCAAGTCAGTGCCTGTCTCATCCATGCTTTATGATGCCAGGCTTAAAGATGAAGTTTCACACCCTGATGCTGGCAA AACTGAAGTTTTGAAGGAGCTGACAAAGGCAAAGATCATGAAATCTTCTCTAAAGGGGAAAATTTCTAGTTTATTTTTCTCGAGGAACAAGAAACCAAGT AAAGATAAATCTGTTGCATGTCAATCTAAAGATGAATCTCAGTCTGCCATCCTAGGGTCACCAGTTCCTCTTACTGAAAAAGTTCGTGATGATGCAGCTC AATGTTGTAATAACTGTGGCTGTGAAAAGCGTTTATCTCCTGTTTTACATGGATCAGCAAGCATAGCTTATCCAGATCTTATCAGCATGGGAACAAATCA AGGCATTGTTTCCCATGAGGGAGGGGTAGCGGTAACAAAGCCCTTGGTGCCTGTGACGATGAATGAGAATCAGGATCAGCCAAGACCTATCTCAGTTTTA GAACCCCCATTCGAAAAGGATGACAACACAATTCTGGAGGCTTCTGGCAGTATCAAGCCAGGTTACAGAGGAATAGAGGTGCCTCTCAAGTCTAATTTGA TTGATAAATCGCCACCAATAGAATCAGTGGCTCGAAATCTATCATGGGATGATTCCCGTGCAGAGACAGCTAGTCCTTATCCATTAAAGTCCTCTCCCTC TCCGGCCCCCTCTGGTGCTGAGGAAGATGAAAAGGACTGGTTTTTCTTGGTCCAAACTCTACTAACAACAGCTGGCCTTGATTCCGACCTGCAATTAGAT TCATTTTTTGCCAGGTGGCATTCGCCCGGAAGCCCATTAGACCCATCATTGAGAGACAAATATGCTAACCTAAATGACAAGGAGCTTTTGCTCGAGGCAA AGCGAAGACAGAGACGATCAAATCGGAAACTTGTATTTGACTCTGTGAATGCAGCGCTGGTTGAAATCACAGGTCATGGATCAGACAGGAGCACAAAGGC GGTGACTTGCAGTGGGGTTCAAAACTGGTTGGTAGAGGGTGCACAACCCCAGATAGTTGACTACTTGTGGGCTCAGTTGAAGTCATGGCTTTGTAGTGAT GTGAGATGTACATTTGGGGACGGTGGAGACAGCAACGGCCTGGTGGTGGAGATGGTGGTAGGGAAAGGGTGGGTAGATAAGATGAGAGTGGAATTAGATA GCTTAGGGAACGAAATAGAAGGAAAGTTGCTGGATGAGCTTGTTGAGGAGGCTGTCTTTGATTTGACAGGTAGGGTGTGA
AA sequence Show only first row Show all	>Potri.014G194600.8 pacid=42762310 polypeptide=Potri.014G194600.8.p locus=Potri.014G194600 ID=Potri.014G194600.8.v4.1 annot-version=v4.1 MGLDTLPHQQPIAATRRSHSRGYSRCSLSHSGILVESWDEDHSFLDKQRPCEGHLCQEQSEYKDVYKIWQQSKNTILRDSSPQKGNHNGSKMMALVRLKF MEAKRLSTDEKGCQSKEFQDALEGSNKDLFLKFLQEPNSLFSQHLHDLQCMPPSPETRRITVLRPSKERFAGSGKKSDKLTKKQSHTGQAIGWEKSNLGY SSAFSNQKIDEYAAQPTRIVVLKPSQRKIHDVKALVSPPSSPPRMLHCEDFYDEPEDFEGQESREVAKKITRNMRENLMGHQRNGTRLSSVYSNGYIGDD SSVNKSENDCAVGNLSDTEILSLTSRHLWDYTNRFDNPYSSSSFSCASCSPESSVCREAKKQLSKRWVMMALNGRAQEQKTARRISSTLGEMLAVSDAKK FVRSKEEVSNKEQEPRGSTSCIPSHLNKEDSTPDSPRSLLRSKSVPVSSMLYDARLKDEVSHPDAGKTEVLKELTKAKIMKSSLKGKISSLFFSRNKKPS KDKSVACQSKDESQSAILGSPVPLTEKVRDDAAQCCNNCGCEKRLSPVLHGSASIAYPDLISMGTNQGIVSHEGGVAVTKPLVPVTMNENQDQPRPISVL EPPFEKDDNTILEASGSIKPGYRGIEVPLKSNLIDKSPPIESVARNLSWDDSRAETASPYPLKSSPSPAPSGAEEDEKDWFFLVQTLLTTAGLDSDLQLD SFFARWHSPGSPLDPSLRDKYANLNDKELLLEAKRRQRRSNRKLVFDSVNAALVEITGHGSDRSTKAVTCSGVQNWLVEGAQPQIVDYLWAQLKSWLCSD VRCTFGDGGDSNGLVVEMVVGKGWVDKMRVELDSLGNEIEGKLLDELVEEAVFDLTGRV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G28760			Protein of unknown function (D...		Potri.014G194600 [exp]	0	1
AT1G27520			Glycosyl hydrolase family 47 p...		Potri.012G076600 [exp]	1.00	0.8561
AT3G26100			Regulator of chromosome conden...		Potri.012G018600 [exp]	4.58	0.7553
AT4G36980			unknown protein		Potri.007G044100 [exp]	12.08	0.7843
AT5G65960			GTP binding (.1)		Potri.007G064500 [exp]	13.03	0.7312
AT4G00231		MEE50	maternal effect embryo arrest ...		Potri.014G074900 [exp]	14.14	0.7093
AT5G27860			unknown protein		Potri.005G023000 [exp]	15.42	0.7352
AT2G19930			RNA-dependent RNA polymerase f...		Potri.007G081300 [exp]	15.58	0.7528
AT2G16365			F-box family protein (.1.2.3.4...		Potri.004G157000 [exp]	16.00	0.7655
AT3G50950		ZAR1	HOPZ-ACTIVATED RESISTANCE 1 (....		Potri.019G125400 [exp]	16.61	0.7583
AT5G13020		AtEML3, ACK1	EMSY-like 3, Emsy N Terminus (...		Potri.003G212300 [exp]	16.91	0.7117

Compare expression of checked genes

Potri.014G194600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.