Plant FIBer expression Database

Potri.014G194800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G20210 527 / 0 RNI-like superfamily protein (.1)
AT1G10510 45 / 0.0002 EMB2004 embryo defective 2004, RNI-like superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G193700
[exp]
47 / 5e-05 AT1G10510 813 / 0.0 embryo defective 2004, RNI-like superfamily protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10011909
[exp]
563 / 0 AT2G20210 441 / 1e-148 RNI-like superfamily protein (.1)
Lus10022840
[exp]
328 / 1e-106 AT2G20210 218 / 2e-64 RNI-like superfamily protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0022 LRR PF00560 LRR_1 Leucine Rich Repeat
Representative CDS sequence
>Potri.014G194800.3 pacid=42763268 polypeptide=Potri.014G194800.3.p locus=Potri.014G194800 ID=Potri.014G194800.3.v4.1 annot-version=v4.1
ATGGCAAGAAAAGTTCCTTCTCTAATATCTCTAGTCATCGAAGCGATCAAAAGAGAAGTAGTGCACGCAGCCGCCGGAGATGATGATGTTCGACCGGACA
TATATGACCTCCCGTCTCATTTATTTAATCGTTTGTTGACAAAATTACCCCCGCTGGCTTTGCACAAATTAGAAACAGATATGCCTTTTAAGGACTGCAA
TGATTACGAGGCTCCTTTGAACGATGGTGGGAGAAAGCGTGGGAGAAATGGAAACTTTGATTCGGCATGGAAGGCGCTGTTTAAGTTGCGCTGGCCTGAC
CCTTTTCACCCTTCTGAAACACAACTTGACTGGCGACGGATATACTGGCAAACACATTTGCAGAATTGCCTTGATGAAGCAGCAGAGTTAGCTTTGCTCC
CCTCTTTTGATGGATGCATCGGTGAGATGAATGTTTCAGATGGTATGCTGAAATGTATTGGTTGCGAGGGACATGTAAATCATCCAAATTATTCTAAATT
ATCATACCACTGCCAACAATTCGGGCACTATGCTAGCTGTTTGAGACTTCAAAATGTGTTCTGTGTTGCAGAAACTTGTGTATTATTAAGGAAGAGCAAC
TTGCAAAGTTTGATAGTGCGGTGGATCAGATCTGAGAAACATGTTGATGGATTATGCAAACTGTTGATCCAAAACAGTGAAACGTTGACATCACTAGAGT
TCATTTACTGCAAGCTTTCACCAACTTTTGTCAGTGCAATATGCGGTTCTTTAAATGTGGTTAATACACACACACATGGAATACAGCACTTCTCAATCAA
CACATCCAGCTTTCTTGAAATTAATCCAGTTTCCTTACCTCCTGGATTTGTATCATTCCTTTCATCAGGCAGGTCTTTGTGTTCTTTGAAATTACATGAC
AACCATCTAGACGGGAATTTTGCATGGATGCTTTTAAGCGTTCTTCTTGATGCTTCCTCTAGCCTATCCATCCTTGACCTTTCTGACAACAATATAGCAG
GATGGCTTGGTAATCTCAATGGGAAATCAAAATGCAAAGTTCCATTATCATTAGGAATAGGAAAGTCTTTGCAATCATTACGTGTACTCAATATAAGGGG
AAATGATCTTCGCAAGGATGACGTGGAGAGTCTTAGATGTGCACTTGTTTCCATGCCGAACTTGGAGATCCTGGATATAAGTGACAATCCCATTGAGGAT
GATGGCATCAGATGCTTAATTCCTTATATTATCGAGGCTACTGATAGATGCTCTCCCTTGGCTGAGTTGTATTTAGAGAATTGTGAGCTTTCCTGCAGTG
GAGCAACTGAACTTTTAGATAGCCTTTCAAACTTGAAAAGACCACTAAACTCTCTCTCACTTGCAGATAATGGCCTTGGCAGTGATGTAGCAGGACCTCT
GCAAAAAATTTTGGGCACATCTATTAAAACACTTAATGTTGGAGGCGTTGGACTGGGTTCGCTTGGCTTTCAGGAACTAGAGAAAGGATTGATGGCAGAA
TTGAAGCTTGTTGATATCAATATAAGCAAAAACCGTGGTGGGTTTGAAACTGCAAGATTTTTGGCAAAGCTCATGTCATTGGCTCCAAACATTATTGCCA
TCAACACAGCATACAATCTCATGCCTTTAGAATCTTTAACAGTTATATGCTCTGCTCTGAAGTTATCTAAAGGTAGTCTTGAGCGTTTGGACTTGACTGG
TAATAACTGGGACTATCAGCCAAATCACGCTTCAATGGTTGCTGAATTCCACCGTAATGGAAGGCCGATCTTCATTCTTCCATCATATCTTGCTGTGGAT
GTTCCCTATGATGACGACCCCTAG
AA sequence
>Potri.014G194800.3 pacid=42763268 polypeptide=Potri.014G194800.3.p locus=Potri.014G194800 ID=Potri.014G194800.3.v4.1 annot-version=v4.1
MARKVPSLISLVIEAIKREVVHAAAGDDDVRPDIYDLPSHLFNRLLTKLPPLALHKLETDMPFKDCNDYEAPLNDGGRKRGRNGNFDSAWKALFKLRWPD
PFHPSETQLDWRRIYWQTHLQNCLDEAAELALLPSFDGCIGEMNVSDGMLKCIGCEGHVNHPNYSKLSYHCQQFGHYASCLRLQNVFCVAETCVLLRKSN
LQSLIVRWIRSEKHVDGLCKLLIQNSETLTSLEFIYCKLSPTFVSAICGSLNVVNTHTHGIQHFSINTSSFLEINPVSLPPGFVSFLSSGRSLCSLKLHD
NHLDGNFAWMLLSVLLDASSSLSILDLSDNNIAGWLGNLNGKSKCKVPLSLGIGKSLQSLRVLNIRGNDLRKDDVESLRCALVSMPNLEILDISDNPIED
DGIRCLIPYIIEATDRCSPLAELYLENCELSCSGATELLDSLSNLKRPLNSLSLADNGLGSDVAGPLQKILGTSIKTLNVGGVGLGSLGFQELEKGLMAE
LKLVDINISKNRGGFETARFLAKLMSLAPNIIAINTAYNLMPLESLTVICSALKLSKGSLERLDLTGNNWDYQPNHASMVAEFHRNGRPIFILPSYLAVD
VPYDDDP

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G20210 RNI-like superfamily protein (... Potri.014G194800
[exp]
0 1
Potri.003G065701
[exp]
1.00 0.9069
AT5G43130 TAF4, TAF4B TBP-associated factor 4B, TBP-... Potri.014G018000
[exp]
3.16 0.8148
AT3G54230 SUA suppressor of abi3-5 (.1.2) Potri.017G138500
[exp]
3.87 0.8538
AT4G38360 LAZ1 LAZARUS 1, Protein of unknown ... Potri.009G165600
[exp]
3.87 0.7965
AT2G43210 Ubiquitin-like superfamily pro... Potri.007G123800
[exp]
6.00 0.7612
AT3G28430 unknown protein Potri.006G073600
[exp]
6.92 0.7797
AT5G10630 Translation elongation factor ... Potri.006G275500
[exp]
8.00 0.7952
Potri.006G225133
[exp]
8.83 0.8660
AT1G63700 EMB71, MAPKKK4,... YODA, MAP KINASE KINASE KINASE... Potri.015G146700
[exp]
9.16 0.7513
AT5G27860 unknown protein Potri.005G023000
[exp]
9.48 0.7894

Potri.014G194800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.