Plant FIBer expression Database

Potri.014G195000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G07270 588 / 0 GTP cyclohydrolase I (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G247100
[exp]
787 / 0 AT3G07270 551 / 0.0 GTP cyclohydrolase I (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10003152
[exp]
684 / 0 AT3G07270 579 / 0.0 GTP cyclohydrolase I (.1.2)
Lus10002353
[exp]
673 / 0 AT3G07270 567 / 0.0 GTP cyclohydrolase I (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0334 THBO-biosyn PF01227 GTP_cyclohydroI GTP cyclohydrolase I
Representative CDS sequence
>Potri.014G195000.4 pacid=42764383 polypeptide=Potri.014G195000.4.p locus=Potri.014G195000 ID=Potri.014G195000.4.v4.1 annot-version=v4.1
ATGAGCGCTTTGGATGAGGGACATTTCAATGCAGAACTTGAGAATGGAGTGAAACTTAATTGCCTTGGTCTGGGAATTCAGGACCAACCAGAGACTGTAG
CTATCGAGGATGCTGTGAAAGTTCTGTTGCAAGGTCTTGGTGAGGATATTAATAGAGAAGGCCTTAAAAAGACCCCACTTCGCGTTGCCAAAGCGCTTCG
AGAAGGAACCAAAGGTTATAAACAAAGGGTAAAGGAAATTGTGCAAGGTGCTTTGTTTCCGGAAGTTGGTTTGGATGATGAAGTTGGTCAGGCAGGAGGA
GCAGGCGGGCTTGTGATTGTTCGGGATCTTGACCTGTTTTCATACTGCGAATCTTGCTTGCTTCCTTTCCAGGTTAAGTGTCAAATAGGTTATGTCCCAT
CTGGTCAGAGGGTTGTAGGATTAAGCAAACTCTCTAGAGTTGCTGATGTGTTTGCCAAACGACTCCAAGACCCACAGCGTTTGGCGGATGAAATCTGCTC
AGCTCTGCATCACGGCGTCATGCCAGCCGGTGTTGCCGTAGTACTCCAATGTTTACATATCCAGTTCCCAAATATAGAGTCACTTTTTCTTGACTCCAAT
CACCAAGGATGGGTTAAGGCAGTGGTCCATTCAGGTTCAGGTGTTTTTGAAAATGAATTAGCTGATGTTTGGGGTGATTTCTTAAGTCTCCTGAAGTTCA
GAGGTATAAACTTGGATAAAACTCAGATGAAAGACTCTGTGCAGCAGTGTTGGTGTCCATCCCGATATTCCTCAAGCGCTAAAGTTATTGGGCCACCCAA
CCGAGGAATGGTTACAGCAGTTACTTCAATTCTCAGCTCTTTGGGTGAAGACCCATTACGGAAAGAGCTTGTTGGAACTCCCAGTCGTTTTGTCAAGTGG
TTGATGAACTTCCAAAGCCCAAATCTGGAGATGAAGCTGAATGGCGTTGCTTGTGGCAGGATGGATCCTCTTAAACAAAACGGGGAAGTCAGCCATAATA
AACAACAGATATATACTGAGCTGTGTCTATCATTCTGGTCCCAGTGCGAGCATCATTTACTTCCCTTTTATGGTGTTGTGCATATTGGGTACTACTGTGC
TGAAGAAACCACCCCTCTCAGCAAATCTCTTTTACAGTCGATAGTACATTTTTATGGTTTCAAGCTCCAAGTACAGGAAAGACTAACCAGGCAGATTGCC
GAGACTGTTTCTTCATTGTTAGGTGGAGATGTGATGGTTGTTGTAGAGGCTAACCATACATGTATGATTTCCAGAGGTATTGAGAAATTTGGAAGCAGTA
CAGCTACAATTGCTGTGCTTGGTCGTTTTTCGACCGACCCAGCAGCAAGGGCCATGTTTTTGAAGAACATCCCAAATCCTGCTTCTGGAGGATCATGA
AA sequence
>Potri.014G195000.4 pacid=42764383 polypeptide=Potri.014G195000.4.p locus=Potri.014G195000 ID=Potri.014G195000.4.v4.1 annot-version=v4.1
MSALDEGHFNAELENGVKLNCLGLGIQDQPETVAIEDAVKVLLQGLGEDINREGLKKTPLRVAKALREGTKGYKQRVKEIVQGALFPEVGLDDEVGQAGG
AGGLVIVRDLDLFSYCESCLLPFQVKCQIGYVPSGQRVVGLSKLSRVADVFAKRLQDPQRLADEICSALHHGVMPAGVAVVLQCLHIQFPNIESLFLDSN
HQGWVKAVVHSGSGVFENELADVWGDFLSLLKFRGINLDKTQMKDSVQQCWCPSRYSSSAKVIGPPNRGMVTAVTSILSSLGEDPLRKELVGTPSRFVKW
LMNFQSPNLEMKLNGVACGRMDPLKQNGEVSHNKQQIYTELCLSFWSQCEHHLLPFYGVVHIGYYCAEETTPLSKSLLQSIVHFYGFKLQVQERLTRQIA
ETVSSLLGGDVMVVVEANHTCMISRGIEKFGSSTATIAVLGRFSTDPAARAMFLKNIPNPASGGS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G07270 GTP cyclohydrolase I (.1.2) Potri.014G195000
[exp]
0 1
AT2G44930 Plant protein of unknown funct... Potri.012G012202
[exp]
1.41 0.9480
AT2G44930 Plant protein of unknown funct... Potri.012G012000
[exp]
2.82 0.9419
AT1G72640 NAD(P)-binding Rossmann-fold s... Potri.003G063800
[exp]
11.61 0.9396
AT5G53580 AtPLR1 pyridoxal reductase 1, NAD(P)-... Potri.015G006900
[exp]
15.00 0.9277
AT1G66840 PMI2, WEB2 WEAK CHLOROPLAST MOVEMENT UNDE... Potri.004G095800
[exp]
16.49 0.9278
AT4G12800 PSAL photosystem I subunit l (.1) Potri.002G239700
[exp]
26.45 0.9311 Pt-PSAL.3
AT1G22380 ATUGT85A3 UDP-glucosyl transferase 85A3 ... Potri.008G062400
[exp]
27.12 0.8889
AT3G01480 ATCYP38, CYP38 ARABIDOPSIS CYCLOPHILIN 38, cy... Potri.001G351400
[exp]
30.51 0.9149
AT5G08410 FTRA2 ferredoxin/thioredoxin reducta... Potri.010G255500
[exp]
32.31 0.9337
AT1G53250 unknown protein Potri.001G393700
[exp]
33.48 0.8953

Potri.014G195000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.