Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G35710 682 / 0 Protein kinase family protein with leucine-rich repeat domain (.1) AT4G08850 659 / 0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) AT1G17230 565 / 0 Leucine-rich receptor-like protein kinase family protein (.1) AT5G44700 552 / 2e-175 GSO2, EDA23 GASSHO 2, EMBRYO SAC DEVELOPMENT ARREST 23, Leucine-rich repeat transmembrane protein kinase (.1) AT5G63930 545 / 2e-174 Leucine-rich repeat protein kinase family protein (.1) AT4G20140 543 / 2e-172 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT2G33170 534 / 4e-170 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT5G48940 518 / 9e-164 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT5G07280 491 / 4e-153 EXS, EMS1 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) AT1G17750 481 / 2e-150 AtPEPR2 PEP1 receptor 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G258400 [exp] 1831 / 0 AT1G35710 681 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.002G258200 [exp] 1810 / 0 AT4G08850 674 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.002G258000 [exp] 1800 / 0 AT4G08850 695 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.014G195200 [exp] 914 / 0 AT1G35710 715 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.019G120733 [exp] 738 / 0 AT1G35710 796 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.019G120700 [exp] 738 / 0 AT1G35710 796 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.019G129100 [exp] 707 / 0 AT1G35710 863 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.019G122500 [exp] 664 / 0 AT1G35710 846 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.019G060084 [exp] 646 / 0 AT4G08850 724 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003612 [exp] 1210 / 0 AT1G35710 751 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Lus10008230 [exp] 967 / 0 AT4G20140 466 / 3e-147 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10008712 [exp] 692 / 0 AT4G08850 1009 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10020935 [exp] 684 / 0 AT4G08850 1011 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10002293 [exp] 607 / 0 AT1G35710 781 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Lus10020936 [exp] 602 / 0 AT4G08850 793 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10019036 [exp] 586 / 0 AT4G08850 891 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10004046 [exp] 576 / 0 AT4G08850 773 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10019035 [exp] 568 / 0 AT4G08850 861 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10031161 [exp] 547 / 6e-177 AT4G08850 710 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.014G195100.7 pacid=42763398 polypeptide=Potri.014G195100.7.p locus=Potri.014G195100 ID=Potri.014G195100.7.v4.1 annot-version=v4.1 ATGGCAGCCTCTCAAAAGCTTTATGCTGCTCTTCTCTTCCACTCTCTCTTTCTCTCCATGCTTCCTTTGAAGGCAACATCATCTGCAAGAACACAAGCTG AAGCTCTCATCCAATGGAAAAACACCTTAACCTCTCCACCTCCTTCTCTCCGTTCATGGTCCCCTTCCAACCTCAACAACCTCTGCAACTGGACTGCCAT TTCCTGCAACTCCACCTCTCGAACAGTTTCTCAAATAAACCTCCCCAGCCTAGAAATAAATGGAACACTTGCCCACTTCAACTTCACCCCATTTACTGAT CTCACCAGGTTTGACATCCAGAATAACACTGTGAGTGGGGCGATCCCATCAGCCATTGGCGGCCTCTCCAAGCTCATTTACTTGGACCTCAGCGTCAACT TTTTCGAGGGCAGCATACCTGTGGAGATTTCAGAGTTGACAGAGCTTCAGTATCTTAGTCTTTTCAACAACAATCTCAACGGTACCATCCCTTCTCAACT TTCCAATCTTCTGAAGGTAAGGCACTTAGACCTTGGAGCAAACTACCTGGAAACCCCTGACTGGTCTAAATTCTCCATGCCTTCATTGGAATATCTTAGC CTTTTTTTCAATGAACTTACTTCGGAATTCCCTGATTTCATAACCAGTTGCCGGAACTTGACGTTTCTGGATTTGTCACTCAATAACTTCACTGGCCAGA TACCAGAGTTGGCGTACACCAATCTGGGAAAGCTGGAGACCTTGAATCTCTATAACAATTTATTCCAAGGACCATTGTCACCCAAAATCTCGATGCTTTC CAATCTCAAAAGCCTTAGTCTACAAACTAATCTATTGGGTGGTCAAATTCCTGAAAGCATTGGTTCGATATCTGGTCTTCGAACTGCTGAACTGTTCAGT AATTCTTTTCAGGGGACTATTCCATCTTCTCTAGGCAAACTTAAGCATCTGGAAAAACTTGATCTCAGAATGAATGCCTTAAACTCAACCATTCCTCCTG AGCTTGGCCTTTGTACTAACCTCACCTACTTGGCCCTGGCTGATAATCAGCTGAGTGGGGAATTGCCTCTTTCTTTGTCCAATCTTTCTAAAATAGCCGA CTTGGGTTTATCTGAGAATTTCTTCTCAGGTGAGATCTCACCTGCCCTTATATCCAACTGGACCGAGTTGACCTCGTTTCAAGTTCAGAACAATAATTTT TCTGGAAATATTCCTCCAGAAATCGGGCAATTGACAATGCTCCAGTTTCTTTTTTTGTATAATAACTCATTCTCTGGTTCCATTCCCCACGAGATAGGAA ACTTGGAAGAGTTGACTAGTCTAGACCTTTCAGGAAACCAGCTTTCTGGCCCCATTCCTCCAACCTTGTGGAATCTCACAAATCTTGAAACCCTGAATCT TTTTTTCAATAACATCAACGGTACAATTCCACCAGAAGTTGGAAATATGACAGCACTGCAAATTCTTGATCTCAACACCAACCAACTCCATGGGGAGTTG CCAGAGACCATTTCAAATCTTACTTTTTTAACTTCTATCAATCTGTTCGGCAATAACTTCTCTGGTAGCATTCCGAGTAATTTTGGGAAGAACATTCCTT CGCTGGTGTATGCTAGCTTTTCAAACAATAGTTTCTCTGGAGAACTGCCGCCTGAATTGTGTAGTGGTCTGAGTCTTCAACAACTTACTGTCAATAGCAA CAACTTTACAGGGGCATTGCCTACCTGCTTGAGGAATTGTTTAGGACTAACTCGAGTTCGGCTTGAGGGTAACCAATTCACTGGAAACATCACTCATGCA TTTGGTGTTCTTCCAAATCTTGTTTTTGTTGCTCTTAATGACAATCAATTTATTGGTGAAATCTCACCAGATTGGGGAGCATGTGAAAACCTCACCAATT TACAGATGGGAAGAAACAGAATTTCTGGTGAAATCCCCGCCGAGCTTGGGAAGTTGCCCCGGCTGGGACTTCTAAGTCTGGACTCCAATGACCTGACTGG GAGGATTCCTGGTGAGTTGGGAAATCTAAGCATGTTATTCATGCTCAATTTGAGCAACAATCATTTGAAAGGGGAGATACCTCAGGGTCTAGGCAGCTTG ACAAGGCTTGAATCTCTCGACTTATCTGATAACAAGCTGACTGGAAACATATCGAAAGAGCTTGGGGGTTATGAGAAGCTATCAAGCTTGGACTTGAGCC ACAACAATCTTTCTGGTGAAATACCTTTCGAGCTGGGCAACTTAAACTTGCGGTACTTGCTGGATCTCAGCAGCAATTCACTCTCAGGAACCATACCTTC AAATTTGGGAAAGCTTTCAATGTTGGAGAATCTCAATGTCTCACATAACCATCTCTCAGGAAGAATCCCAGATTCACTGTCCACCATGATTAGCCTGCAT TCTTTTGATTTCTCATACAATGACTTGACAGGTCCTATACCAACTGGAAGTGTTTTCCAAAATGCATCTGCAAGATCTTTTATTGGAAATTCAGGATTGT GCGGTAATGTAGAAGGATTATCACAATGTCCAACAACAGACAATCGCAAGTCCTCAAAGCATAACAAAAAGGTTCTTATTGGTGTTATCGTTCCAGTTTG TTGCTTATTAGTAGTAGCAACTATTTTCGCTGTTCTGCTATGTTGCCGAAAAACCAAACTGCTTGATGAAGAGATCAAACGCATCAATAATGGTGAGAGT TCTGAGTCAATGGTATGGGAAAGAGACAGCAAGTTAACATTTGGGGATATTGTCAATGCCACTGATGACTTCAATGAGAAGTACTGCATTGGAAGAGGAG GATTTGGCAGTGTTTACAAAGCAGTATTGTCTACAGGTCAAGTGATTGCAGTAAAGAAACTCAACATGTCAGACTCCAGTGACATCCCAGCACTCAATCG CCAGAGTTTTGAGAATGAGATTAAACTGCTGACAGAAGTTAGGCACCGTAACATCATAAAGCTTTTTGGATTTTGCTCCAGGAGGGGCTGCTTGTACCTG GTTTACGAGTATGTTGAAAGAGGAAGCTTGGGAAAAGTATTGTATGGGATAGAAGGGGAAGTGGAGCTTGGTTGGGGCAGGAGAGTGAATATAGTGCGAG GAGTAGCTCATGCAGTTGCCTACTTGCACCATGACTGTTCTCCACCCATTGTACACCGGGACATATCATTGAACAACATTTTGCTGGAGACAGATTTTGA GCCCCGTCTTTCAGACTTTGGCACAGCAAGACTCTTGAATACAGACACATCCAACTGGACTGCAGTTGCTGGGTCTTATGGCTACATGGCTCCAGAGCTG GCGCAAACAATGCGGCTCACAGACAAATGTGATGTGTACAGCTTTGGGGTGGTGGCTTTGGAAGTTATGATGGGAAAGCACCCGGGAGAGCTCTTATCAT CAATAAAACCATCACTGTCAAACGATCCAGAGTTGTTTCTAAAGGATGTGCTAGACCCTCGGCTTGAAGCTCCCACTGGCCAAGCAGCAGAGGAAGTTGT TTTCGTAGTTACAGTGGCCTTAGCATGCACACGAAACAACCCAGAGGCACGACCCACCATGCGTTTCGTGGCACAAGAATTATCAGCACGAACTCAAGCT TACCTGGCCGAGCCGTTGGACTCAATAACGATCAGCAAGTTAACGAGGCTACAAAAATAG
AA sequence Show only first row Show all	>Potri.014G195100.7 pacid=42763398 polypeptide=Potri.014G195100.7.p locus=Potri.014G195100 ID=Potri.014G195100.7.v4.1 annot-version=v4.1 MAASQKLYAALLFHSLFLSMLPLKATSSARTQAEALIQWKNTLTSPPPSLRSWSPSNLNNLCNWTAISCNSTSRTVSQINLPSLEINGTLAHFNFTPFTD LTRFDIQNNTVSGAIPSAIGGLSKLIYLDLSVNFFEGSIPVEISELTELQYLSLFNNNLNGTIPSQLSNLLKVRHLDLGANYLETPDWSKFSMPSLEYLS LFFNELTSEFPDFITSCRNLTFLDLSLNNFTGQIPELAYTNLGKLETLNLYNNLFQGPLSPKISMLSNLKSLSLQTNLLGGQIPESIGSISGLRTAELFS NSFQGTIPSSLGKLKHLEKLDLRMNALNSTIPPELGLCTNLTYLALADNQLSGELPLSLSNLSKIADLGLSENFFSGEISPALISNWTELTSFQVQNNNF SGNIPPEIGQLTMLQFLFLYNNSFSGSIPHEIGNLEELTSLDLSGNQLSGPIPPTLWNLTNLETLNLFFNNINGTIPPEVGNMTALQILDLNTNQLHGEL PETISNLTFLTSINLFGNNFSGSIPSNFGKNIPSLVYASFSNNSFSGELPPELCSGLSLQQLTVNSNNFTGALPTCLRNCLGLTRVRLEGNQFTGNITHA FGVLPNLVFVALNDNQFIGEISPDWGACENLTNLQMGRNRISGEIPAELGKLPRLGLLSLDSNDLTGRIPGELGNLSMLFMLNLSNNHLKGEIPQGLGSL TRLESLDLSDNKLTGNISKELGGYEKLSSLDLSHNNLSGEIPFELGNLNLRYLLDLSSNSLSGTIPSNLGKLSMLENLNVSHNHLSGRIPDSLSTMISLH SFDFSYNDLTGPIPTGSVFQNASARSFIGNSGLCGNVEGLSQCPTTDNRKSSKHNKKVLIGVIVPVCCLLVVATIFAVLLCCRKTKLLDEEIKRINNGES SESMVWERDSKLTFGDIVNATDDFNEKYCIGRGGFGSVYKAVLSTGQVIAVKKLNMSDSSDIPALNRQSFENEIKLLTEVRHRNIIKLFGFCSRRGCLYL VYEYVERGSLGKVLYGIEGEVELGWGRRVNIVRGVAHAVAYLHHDCSPPIVHRDISLNNILLETDFEPRLSDFGTARLLNTDTSNWTAVAGSYGYMAPEL AQTMRLTDKCDVYSFGVVALEVMMGKHPGELLSSIKPSLSNDPELFLKDVLDPRLEAPTGQAAEEVVFVVTVALACTRNNPEARPTMRFVAQELSARTQA YLAEPLDSITISKLTRLQK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G35710			Protein kinase family protein ...		Potri.014G195100 [exp]	0	1
AT1G53050			Protein kinase superfamily pro...		Potri.013G130000 [exp]	1.41	0.9243
AT3G11820		PEN1, AT-SYR1, ...	PENETRATION1, SYNTAXIN RELATED...		Potri.006G202200 [exp]	3.00	0.9044	SYP121.2
AT2G30020			Protein phosphatase 2C family ...		Potri.009G073000 [exp]	6.48	0.8688	Pt-MP2.9
AT3G52430		PAD4, ATPAD4	ARABIDOPSIS PHYTOALEXIN DEFICI...		Potri.005G068700 [exp]	9.38	0.9062
AT2G28890		PLL4	poltergeist like 4 (.1)		Potri.001G239300 [exp]	10.00	0.8835
AT3G50950		ZAR1	HOPZ-ACTIVATED RESISTANCE 1 (....		Potri.005G119800 [exp]	11.40	0.8921	RPP13.1
AT4G11070	WRKY	ATWRKY41, WRKY4...	WRKY family transcription fact...		Potri.003G138600 [exp]	12.48	0.8788	Pt-WRKY53.1
AT3G23250	MYB	ATMYB15, ATY19	myb domain protein 15 (.1.2)		Potri.005G224100 [exp]	14.14	0.8951
AT4G33050		EDA39	embryo sac development arrest ...		Potri.006G226500 [exp]	20.49	0.8917
AT2G40140	C3HZnF	ATSZF2, CZF1, Z...	\(SALT-INDUCIBLE ZINC FINGER 2...		Potri.008G069400 [exp]	21.21	0.8765

Compare expression of checked genes

Potri.014G195100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.