Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G35710 714 / 0 Protein kinase family protein with leucine-rich repeat domain (.1) AT4G08850 701 / 0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) AT4G20140 597 / 0 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT5G63930 557 / 3e-179 Leucine-rich repeat protein kinase family protein (.1) AT1G17230 547 / 2e-175 Leucine-rich receptor-like protein kinase family protein (.1) AT2G33170 539 / 4e-172 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT5G48940 531 / 5e-169 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT5G44700 534 / 1e-168 GSO2, EDA23 GASSHO 2, EMBRYO SAC DEVELOPMENT ARREST 23, Leucine-rich repeat transmembrane protein kinase (.1) AT3G24240 518 / 9e-164 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT5G07280 514 / 1e-161 EXS, EMS1 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G258400 [exp] 963 / 0 AT1G35710 681 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.002G258200 [exp] 961 / 0 AT4G08850 674 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.014G195100 [exp] 945 / 0 AT1G35710 681 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.002G258000 [exp] 935 / 0 AT4G08850 695 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.019G120733 [exp] 754 / 0 AT1G35710 796 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.019G120700 [exp] 754 / 0 AT1G35710 796 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.019G129100 [exp] 716 / 0 AT1G35710 863 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.019G122500 [exp] 713 / 0 AT1G35710 846 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.015G123800 [exp] 692 / 0 AT4G08850 751 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003612 [exp] 800 / 0 AT1G35710 751 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Lus10008712 [exp] 702 / 0 AT4G08850 1009 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10020935 [exp] 702 / 0 AT4G08850 1011 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10008230 [exp] 658 / 0 AT4G20140 466 / 3e-147 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10002293 [exp] 626 / 0 AT1G35710 781 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Lus10019036 [exp] 623 / 0 AT4G08850 891 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10020936 [exp] 611 / 0 AT4G08850 793 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10019035 [exp] 599 / 0 AT4G08850 861 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10031161 [exp] 590 / 0 AT4G08850 710 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10004046 [exp] 586 / 0 AT4G08850 773 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.014G195200.1 pacid=42764669 polypeptide=Potri.014G195200.1.p locus=Potri.014G195200 ID=Potri.014G195200.1.v4.1 annot-version=v4.1 ATGACAAGAACACTGCAGAGGATATTTCACTTTCTCATTCTCTCTTCTGCTTTTGTGCTAATCACTGCACAGAGAGAAGCGGAAACATTGCTAAACTGGA AAAATAGTTTAAACTTTCCAACTTTACCTTCATGGACGCTCAACAGCAGCAGTAGCCCATGCAACTGGACAGGAATTCGGTGCAGTGGAGAGGGAAGCAT TATTGAGATAAATCTCGAGAACTCAGGCCTGGATGGAACTCTTGACAGGTTTGATTCCTCATCGTTTCCTAACCTTAGTTCACTCAATCTCAATTTGAAC AATCTCGTAGGAGATATCCCATCTGGAATTGGGAATGCCACAAAACTCATTTCACTTGATCTCAGTAGCAACAATTTCACCAATCAAATCCCCCCAGAAA TTGGTAACCTTAAAGAACTTCAAGTTCTTCGTCTCTACAACAACTCACTCACAGGCCCAATTCCACATCAGCTAAGCAACCTACAAAAGTTGTGGCTTCT CGATCTTAGTGCAAACTACCTAAGAGATCCTGACCCTGTTCAATTCAAGGGTATGGCATCTTTAACAGAGCTGCGGCTTTCCTATATCCTTTTGGAGGCA GTTCCTGCATTCATTGCTGAGTGCCCAAACCTGATCTTTCTTGATCTTTCAGATAATCTAATCACAGGTCAGATTCCTATGCCATTACTATCTCGTTTGA AAAGACTTGAGTTCCTGAACTTGACAAAGAATTCAGTTGAAGGACCTCTTTCCACAAATATAGGAAATTTTAGAAATCTTCGACACCTGAGGCTTGGAAT GAACAAACTGAATGGTACAATACCATATGAAATTGGGCTGCTCTCAAACCTTGAAGTTCTTGAGTTGCATGAAAATGGGTTTGATGGTCCAATGCCCTCT TCAGTTGGGAATCTCAGGATGCTTCGAAATTTAAATCTCAAATTGTCAGGCCTGAATTCCAGCATTCCAGAAGAACTTGGTTTGTGCTCCAACCTCACTT ACCTTGAGCTATCATCCAACAGCCTTATAGGTGCATTGCCTCTTTCCATGGCCTCATTAACACAAATCAGAGAGTTCGGAATATCTGACAATAAACTATC AGGAAACATCCATCCATCTCTCTTATCCAATTGGTCAGAGCTTGTTTCTTTGCAACTCCAAATAAATAATTTTTCTGGAAAAGTTCCACCTCAAATTGGA ACTCTCCATAAGCTCAAGCTTCTGTATCTTTTTCAGAATCGATTATCAGGTCCCATACCACCAGAAATAGGAAATTTGTCGAATTTGATAGAGCTTCAAT TGGCCGACAACTTTTTCACCGGTTCCATCCCTCCAACTATTGGAAATTTGTCAAGTCTCACCAAATTGATTCTTCCTTATAACCAGCTCAACGGAAAACT TCCTCCTGAATTAGGTAATATCAAAAGTTTAGAAGAGCTTGACCTGAGTGAAAATGACTTGCAAGGAACCTTGCCTTTGTCAATAACTGGCTTGAGAAAC CTCAATTTATTCTATGTTGCTTCCAACAATTTCTCAGGAAGCATTCCCGAAGACTTTGGCCCTGATTTCTTGAGAAATGCAACCTTCTCCTACAACAATT TTTCAGGAAAGCTTCCTCCAGGAATTTGTAATGGAGGGAAGCTTATCTACTTGGCAGCCAATAGAAATAATCTTGTGGGACCAATCCCTTCAAGTCTTAG GAACTGCACAGGACTAACCAGAGTCCGCCTTGAACAGAATCTTCTGGATGGAGACATTTCAAATGCATTCGGCATGTACCCAAACCTGGAGTATATTGAC TTGGGAGACAACCGGCTCTCTGGCATGTTATCATCAAACTGGGGACAGTGCACAATCCTCTCAAACTTTCGCATAGCAGGCAACATCATGTCAGGCAACA TTCCACCGGAGCTTGGAAACTTAACAGAGCTACAGAATCTTGACCTCTCTGGCAACCAACTGATTGGGAAGATTCCAATTGAGCTTTTCAGCTCTTCAAA GCTCAACAGATTTAATTTGAGCAACAATCAACTCTCAGGTCACATACCAGAAGAAGTTGGAATGCTTTCACAGCTGCAGTATTTGGATTTTTCACAAAAT AATCTAAGTGGGCGGATACCAGAAGAACTTGGAGACTGCCAGGCACTTATCTTCTTAGACCTGAGCAATAACAGACTGAATGGGACAATGCCATACCAGA TTGGGAATCTAGTTGCCTTGCAGATTGTGTTAGACCTCAGCCAAAACTTGATCACTGGAGAGATATCCTCACAGCTTCGAAAATTGACAAGACTGGAAAT ACTGAATATTTCTCACAATCATCTTTCTGGCCCAATACCATCTTCCTTACAAGACCTATTGAGCCTTCAACAAGTTGATATATCACATAATAATCTCGAG GGGCCTCTCCCAGACAATAAGGCTTTTCGGCGAGCTCCTGCTGCATCATTGGTTGGCAATACTGGTTTATGTGGGGAAAAGGCACAAGGTTTGAACCCTT GCCGCAGGGAAACTTCATCTGAAAAGCATAATAAAGGAAACAGAAGGAAGCTGATCGTTGCCATTGTCATTCCACTATCAATCTCAGCAATCCTATTAAT TTTGTTTGGGATTCTCATCTTCCGGCGTCATTCCAGAGCTGATCGAGACAAGATGAAGAAGGATTCAGAAGGCGGAAGCTCATTTTCTGTGTGGAATTAC AACAAGAGAACAGAGTTTAACGATATAATTACAGCAACAGAGAGTTTTGATGATAAGTATTGCATAGGAAATGGCGGTCAGGGAAATGTGTACAAAGCAA TGCTTCCATCAGGAGATGTTTTTGCTGTAAAACGTCTTCACCCTTCTGAAGACAATGAGTTCAGTAAGGAATATCAGCTTAAGAATTTTAAGGCTGAAAT GTATTCGCTAGCTGAAATTCGGCATCGGAACGTTGTAAAGATGTACGGGTTCAGTTCCTGTAGCGGATCATTGTTTTTTGTATATGAGTTTGTTGAGAGG GGAAGCGTGGGTAAGTTGTTGAATGAAGAGAAAGAGGCAAAGCTCTGGAACTGGGATTTGAGATTACAGGCCATCAAAGGAGTGGCACATGGGCTGTCTT ACTTGCACCATGATTGCACACCAGCTATTGTGCATCGAGACATATCAGCAAACAATATTCTGTTGGATGCAGCGTTTGAGCCTAAGATTTCTGACTTCGG GACAGCAAGGCTGCTAAGAGAAGGTGAATCTAACTGGACACTCCCAGTTGGTTCATATGGCTATATTGCACCAGAGCTAGCCTCTACAGGTCAAGTGACA GAGAAACTAGACGTGTATAGTTTCGGAGTTGTTGCGCTAGAAGTACTAATGGGGAAGCACCCTGGAGAAATGCTTTTACATTTGCAATCTGGAGGGCATG ATATCCCCTTTTCAAACCTTTTAGACGAAAGGCTTACACCTCCAGTTGGTCCAATCGTCCAAGAACTGGTTTTAGTAACGGCCCTCGCATTTTTATGTGT ACAGGAAAATCCCATATCCCGGCCAACGATGCATCAAGTTTGCAGCGAACTTTCGGCAAGAAGAAGCCTACATGTCCCTGCACCTCTCCGCCTCCTCACG CTGCGAAATCTGATGAACATGCTTAAGGATCAAGCATCATCCTCTGTAACTTCTTATGTGTAA
AA sequence Show only first row Show all	>Potri.014G195200.1 pacid=42764669 polypeptide=Potri.014G195200.1.p locus=Potri.014G195200 ID=Potri.014G195200.1.v4.1 annot-version=v4.1 MTRTLQRIFHFLILSSAFVLITAQREAETLLNWKNSLNFPTLPSWTLNSSSSPCNWTGIRCSGEGSIIEINLENSGLDGTLDRFDSSSFPNLSSLNLNLN NLVGDIPSGIGNATKLISLDLSSNNFTNQIPPEIGNLKELQVLRLYNNSLTGPIPHQLSNLQKLWLLDLSANYLRDPDPVQFKGMASLTELRLSYILLEA VPAFIAECPNLIFLDLSDNLITGQIPMPLLSRLKRLEFLNLTKNSVEGPLSTNIGNFRNLRHLRLGMNKLNGTIPYEIGLLSNLEVLELHENGFDGPMPS SVGNLRMLRNLNLKLSGLNSSIPEELGLCSNLTYLELSSNSLIGALPLSMASLTQIREFGISDNKLSGNIHPSLLSNWSELVSLQLQINNFSGKVPPQIG TLHKLKLLYLFQNRLSGPIPPEIGNLSNLIELQLADNFFTGSIPPTIGNLSSLTKLILPYNQLNGKLPPELGNIKSLEELDLSENDLQGTLPLSITGLRN LNLFYVASNNFSGSIPEDFGPDFLRNATFSYNNFSGKLPPGICNGGKLIYLAANRNNLVGPIPSSLRNCTGLTRVRLEQNLLDGDISNAFGMYPNLEYID LGDNRLSGMLSSNWGQCTILSNFRIAGNIMSGNIPPELGNLTELQNLDLSGNQLIGKIPIELFSSSKLNRFNLSNNQLSGHIPEEVGMLSQLQYLDFSQN NLSGRIPEELGDCQALIFLDLSNNRLNGTMPYQIGNLVALQIVLDLSQNLITGEISSQLRKLTRLEILNISHNHLSGPIPSSLQDLLSLQQVDISHNNLE GPLPDNKAFRRAPAASLVGNTGLCGEKAQGLNPCRRETSSEKHNKGNRRKLIVAIVIPLSISAILLILFGILIFRRHSRADRDKMKKDSEGGSSFSVWNY NKRTEFNDIITATESFDDKYCIGNGGQGNVYKAMLPSGDVFAVKRLHPSEDNEFSKEYQLKNFKAEMYSLAEIRHRNVVKMYGFSSCSGSLFFVYEFVER GSVGKLLNEEKEAKLWNWDLRLQAIKGVAHGLSYLHHDCTPAIVHRDISANNILLDAAFEPKISDFGTARLLREGESNWTLPVGSYGYIAPELASTGQVT EKLDVYSFGVVALEVLMGKHPGEMLLHLQSGGHDIPFSNLLDERLTPPVGPIVQELVLVTALAFLCVQENPISRPTMHQVCSELSARRSLHVPAPLRLLT LRNLMNMLKDQASSSVTSYV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G35710			Protein kinase family protein ...		Potri.014G195200 [exp]	0	1
AT4G19950			unknown protein		Potri.005G186200 [exp]	1.00	0.9778	ORF.5
AT1G32690			unknown protein		Potri.003G092700 [exp]	2.00	0.9530
AT4G25800			Calmodulin-binding protein (.1...		Potri.013G010700 [exp]	3.87	0.9476
AT1G01340		ACBK1, ATCNGC10	cyclic nucleotide gated channe...		Potri.014G097900 [exp]	4.47	0.9513
AT1G29290			unknown protein		Potri.004G061300 [exp]	5.29	0.9439
AT5G40010		ASD, AATP1	ATPase-in-Seed-Development, AA...		Potri.004G091500 [exp]	6.00	0.9519
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Potri.008G212500 [exp]	8.12	0.9458
AT3G11820		PEN1, AT-SYR1, ...	PENETRATION1, SYNTAXIN RELATED...		Potri.016G068600 [exp]	9.48	0.9314	Pt-SYP121.1
					Potri.004G188300 [exp]	12.72	0.9275
AT2G32030			Acyl-CoA N-acyltransferases (N...		Potri.010G085600 [exp]	13.41	0.9399

Compare expression of checked genes

Potri.014G195200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.