Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04010 1040 / 0 ATPSAT1 phospholipid sterol acyl transferase 1 (.1) AT5G13640 76 / 4e-14 PDAT1, ATPDAT PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE 1, ARABIDOPSIS THALIANA PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE, phospholipid:diacylglycerol acyltransferase (.1) AT3G44830 63 / 5e-10 Lecithin:cholesterol acyltransferase family protein (.1) AT1G27480 50 / 3e-06 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G171000 [exp] 86 / 4e-17 AT5G13640 1055 / 0.0 PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE 1, ARABIDOPSIS THALIANA PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE, phospholipid:diacylglycerol acyltransferase (.1) Potri.003G063100 [exp] 82 / 3e-16 AT5G13640 1077 / 0.0 PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE 1, ARABIDOPSIS THALIANA PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE, phospholipid:diacylglycerol acyltransferase (.1) Potri.004G190100 [exp] 64 / 2e-10 AT3G44830 911 / 0.0 Lecithin:cholesterol acyltransferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024927 [exp] 1132 / 0 AT1G04010 1021 / 0.0 phospholipid sterol acyl transferase 1 (.1) Lus10003615 [exp] 1119 / 0 AT1G04010 1005 / 0.0 phospholipid sterol acyl transferase 1 (.1) Lus10008234 [exp] 1108 / 0 AT1G04010 991 / 0.0 phospholipid sterol acyl transferase 1 (.1) Lus10037657 [exp] 90 / 2e-18 AT5G13640 1049 / 0.0 PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE 1, ARABIDOPSIS THALIANA PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE, phospholipid:diacylglycerol acyltransferase (.1) Lus10015639 [exp] 87 / 1e-17 AT5G13640 1053 / 0.0 PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE 1, ARABIDOPSIS THALIANA PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE, phospholipid:diacylglycerol acyltransferase (.1) Lus10021564 [exp] 86 / 3e-17 AT5G13640 989 / 0.0 PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE 1, ARABIDOPSIS THALIANA PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE, phospholipid:diacylglycerol acyltransferase (.1) Lus10017165 [exp] 85 / 6e-17 AT5G13640 991 / 0.0 PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE 1, ARABIDOPSIS THALIANA PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE, phospholipid:diacylglycerol acyltransferase (.1) Lus10019519 [exp] 79 / 7e-15 AT3G44830 923 / 0.0 Lecithin:cholesterol acyltransferase family protein (.1) Lus10007728 [exp] 54 / 3e-07 AT1G27480 484 / 3e-170 alpha/beta-Hydrolases superfamily protein (.1) Lus10018664 [exp] 50 / 3e-06 AT1G27480 491 / 5e-173 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF02450 [poplar] [flax] LCAT Lecithin:cholesterol acyltransferase
Representative CDS sequence Show only first row Show all	>Potri.014G195500.9 pacid=42762384 polypeptide=Potri.014G195500.9.p locus=Potri.014G195500 ID=Potri.014G195500.9.v4.1 annot-version=v4.1 ATGAGAGGAAACCTCCACATTGCCACCATTTTGGTGGTTCTACTTATACACGCAGCGCTGCATAATACCCCCGTTGACGGCGGAGAGTTCATCGGAGACT ACTCCAAGTTATCCGGAATTATAATTCCAGGATTCGCATCTACTCAGCTTAGAGCGTGGTCTTTCCTTGATTGTCCTTACTCTCCTCTCAACTTCAACCC TCTCGACTTGGTCTGGCTTGACACTACCAAACTACTTTCTGCTGTGAACTGTTGGCTTAAGTGCATGTTACTTGACCCTTACAATCAAACAGACCATCCT GAATGCAAATCGCGTCCCGATAGTGGTCTTTCTGCTATTACGGAACTTGATCCTGGTTATATCACAGGTCCTCTTTCTTCAGTGTGGAAAGATTGGGTTA AGTGGTGCATAGAGTTTGGCATCGAGGCGAATTCAATCATTGCTGTGCCATATGACTGGAGATTGTCACCATCAATGCTTGAGGAGCGAGACCTTTATTT TCACAGGCTCAAGTTAACATTTGAAACTGCCCTTAAACTTCGAGGAGGACCCTCAATAGTATTTGCCCATTCTTTGGGTAACCATGTCTTCCGCTACTTT CTGGAATGGTTAAAACTGGAAATTGCACCTAAACATTATAACCAGTGGCTTGATGAACACATTCATGCCTATTTTGCAGTTGGAGCTCCTCTTCTTGGTG CAATTGAGACAGTGAAAGCAACATTTTTCGGGAACACATTTGGTCTTCCAGTTTCTGAGGGAACAGCTCGATTGATGTTCAATTCTTTTGCTTCTTCATT ATGGATGATGCCATTTTCAAAGTATTGTAGAACCGATAATTCTTACTGTAGGCATTTTGCCGGGGGATTCAGGAAGGGTCATAACACATATCAATGTGAG GAGCAGGAATTTCGTTTAAACTATTCTGGATGGCCAACAAATATAGTCAACATAGAAATTCCTTCTGTTCGTGGCTTTGATGCCTATCCGTCAGTTACCG AATTAGCTCAAACCAACTTGTCTAGCATGGAATGCGGGCTTCCTACTCAGTTATCCTTTTCAGCTCGTGAAATATCAGATGGGACCCTTTTCAAAGCAAT AGAAGATTATGAATCAGATAGCAAGAGGCTTTTATACCAATTAAAGAAGTCATATCATGATGATCCTGTTTTGAATCCACTAACTCCTTGGGACAGACCA CCTATAAAAAATGTTTTCTGCATCTATGGAATAGATTCAAGGACCGAGGTTGGTTACTATTTTGCACCGAGTGGCAAGCCTTACCCTGATAATTGGATCA CAACCGATGTCATTTATGAGCTTGAAGGGTCTCTGTACTCCAGGTCAGGGAACTTGGTCGAAGGTAATCCTGGAGCTGCAAGTGGGGATGATACGGTACC ATACAATTCTCTCTCTTTGTGTAAGAATTGGCTTGGACCAAAAGTGAACATAACAAGGGCTCCTCAGTCAGAGCATGATGGATCTGATGTACAAGTGGAT TTGAATGTAGAACATCAGCATGAAGAGGATATAGTTCCCAACATGACAAGGTCTCCAAGAGTAAAGTACATCACCTATTATGAAGATTCTGAAAGTATTC CAGGAAGAAGAACAGCAGTTTGGGAGCTCGATAAAGCAAGTCACAGGAACATTGTTAGATCCCCAGCTCTAATGAGAGAGTTGTGGCTTCAGATGTGGCA CGATATCCATCCCGGTGCAAAATCAAAATTTGTTACCAAAGCTAAGCGTGGACCTTTAAGAGATGAAGATTGTTACTGGGACTATGGGAAAGCTCGATGT TCGTGGCCTGAGTACTGTGAATATAGATATCTTTTTGGGGATGTTCACTTGGGACAGAGCTGTCGGTTGAAGAATTCTTCAGCTGATGCACTCTTGAATT ACCTATAG
AA sequence Show only first row Show all	>Potri.014G195500.9 pacid=42762384 polypeptide=Potri.014G195500.9.p locus=Potri.014G195500 ID=Potri.014G195500.9.v4.1 annot-version=v4.1 MRGNLHIATILVVLLIHAALHNTPVDGGEFIGDYSKLSGIIIPGFASTQLRAWSFLDCPYSPLNFNPLDLVWLDTTKLLSAVNCWLKCMLLDPYNQTDHP ECKSRPDSGLSAITELDPGYITGPLSSVWKDWVKWCIEFGIEANSIIAVPYDWRLSPSMLEERDLYFHRLKLTFETALKLRGGPSIVFAHSLGNHVFRYF LEWLKLEIAPKHYNQWLDEHIHAYFAVGAPLLGAIETVKATFFGNTFGLPVSEGTARLMFNSFASSLWMMPFSKYCRTDNSYCRHFAGGFRKGHNTYQCE EQEFRLNYSGWPTNIVNIEIPSVRGFDAYPSVTELAQTNLSSMECGLPTQLSFSAREISDGTLFKAIEDYESDSKRLLYQLKKSYHDDPVLNPLTPWDRP PIKNVFCIYGIDSRTEVGYYFAPSGKPYPDNWITTDVIYELEGSLYSRSGNLVEGNPGAASGDDTVPYNSLSLCKNWLGPKVNITRAPQSEHDGSDVQVD LNVEHQHEEDIVPNMTRSPRVKYITYYEDSESIPGRRTAVWELDKASHRNIVRSPALMRELWLQMWHDIHPGAKSKFVTKAKRGPLRDEDCYWDYGKARC SWPEYCEYRYLFGDVHLGQSCRLKNSSADALLNYL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G04010		ATPSAT1	phospholipid sterol acyl trans...		Potri.014G195500 [exp]	0	1
AT3G02050		ATKT4, ATKUP3, ...	K+ uptake transporter 3, ARABI...		Potri.002G237500 [exp]	1.41	0.8063	Pt-KUP3.2
AT3G09090		DEX1	DEFECTIVE IN EXINE FORMATION 1...		Potri.016G110800 [exp]	6.92	0.6924
AT2G12550		NUB1	homolog of human NUB1, ubiquit...		Potri.006G061500 [exp]	14.89	0.7825
AT5G43500		ATARP9	actin-related protein 9 (.1.2)		Potri.008G165000 [exp]	16.37	0.7534
AT5G20610			unknown protein		Potri.006G145500 [exp]	24.37	0.7611
AT1G25540		MED25, PFT1	PHYTOCHROME AND FLOWERING TIME...		Potri.008G117700 [exp]	34.07	0.7418
AT5G60250			zinc finger (C3HC4-type RING f...		Potri.009G150100 [exp]	36.55	0.7440
AT3G48195			Phox (PX) domain-containing pr...		Potri.012G082500 [exp]	55.09	0.7057
AT5G66820			unknown protein		Potri.007G041300 [exp]	57.57	0.7214
AT4G21865			unknown protein		Potri.010G065666 [exp]	67.67	0.7139

Compare expression of checked genes

Potri.014G195500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.