Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28590 355 / 3e-122 MRL7 Mesophyll-cell RNAi Library line 7, unknown protein AT2G31840 122 / 7e-32 MRL7-L Mesophyll-cell RNAi Library line 7-like, Thioredoxin superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G145700 [exp] 104 / 3e-25 AT2G31840 301 / 8e-101 Mesophyll-cell RNAi Library line 7-like, Thioredoxin superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024925 [exp] 360 / 1e-123 AT4G28590 336 / 1e-114 Mesophyll-cell RNAi Library line 7, unknown protein Lus10022899 [exp] 348 / 5e-119 AT4G28590 322 / 3e-109 Mesophyll-cell RNAi Library line 7, unknown protein Lus10033475 [exp] 125 / 9e-34 AT2G31840 351 / 2e-122 Mesophyll-cell RNAi Library line 7-like, Thioredoxin superfamily protein (.1) Lus10020901 [exp] 125 / 5e-33 AT2G31840 358 / 9e-124 Mesophyll-cell RNAi Library line 7-like, Thioredoxin superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.014G195600.4 pacid=42763373 polypeptide=Potri.014G195600.4.p locus=Potri.014G195600 ID=Potri.014G195600.4.v4.1 annot-version=v4.1 ATGTCTCTCCTTCAAACGATGGCCGTGCCGAAGCCCGTTTCGCATCTTCGTTCAATAAACGATGAACCTAATTTTGCCCGCTTTCCGGCAATTTCTCATC AAAATGCTTTACACTATGAGCACAACTCAAGACGTTTTCCTTGCTTTTCTGTTTCAAAGAAATCTGACCCTGAATCCAGTTCTAACCCCAAAATGAATTC TAGAGGAAGAACTCGCCGACCGAAAAACGAAGATGGTGGAAAGGAAGGCGGGGAAATTTTCCCGACCACAATTCCAAGGAAGCCAAAACGTGGCCGAAGG AGTGAAGCAGTTGCGGTTGAGGACTTCGTGCGTGATTCGCTGGAACGAACATTTGCATCAATTAGGCAGCAGAACCCGGATGTTTTAGAGGAAATAATGA AGGATAAAGTTAATGAAAATATAGATTCTGAAACGAGTGATGATGATGATGAAGACGATGACGAGGAGGAGGAGGAAGGTGGTGGTGAGGATGGTAAAGG GAAAGGAAAGAAAAAGAAGATGGTGGTTGAGGAGGAAAGTCGAGATTGGCCATTGGATGCTGATGTGGGGTGGGGAGTTAGGGCGTCTGAATATTTTGAG AAGCATCCAATAAAGAATGTTGTAGGAGAAGATGGGTTTGAGATTGACTGGGAAGGAGAGATGGAGGATAACTGGGTGAATGAGATTAACTGCCTAGACT GGGAGAGATTTGCCTTCCATCCAAGTCCACTGATTGTTCTTGTATTTGAGAGATACAGCAGGGCAACTGATAATTGGAAGACTTTGAAAGAGCTAGAAAA GGCAGCCAAGGTGTATAGGGGTGCCAAGGATCGATTGCCTCCTCGGACAGTGAAGATAGACATCAATATTGAGAGAGATTTGGCATATGCTCTTAAAGTT AAAGAATGCCCTCAGATTTTGTTTTTACGTGGAAACAAGATCCTGTATAGGGAGAAAGAGTTTCGAACTGCAGATGAGTTGGTCCAGATGATCGCACATT TCTACTACAATGCTAAGAAACCTTCATGTGTTAACAATGCAAATTTATGCCCTTAA
AA sequence Show only first row Show all	>Potri.014G195600.4 pacid=42763373 polypeptide=Potri.014G195600.4.p locus=Potri.014G195600 ID=Potri.014G195600.4.v4.1 annot-version=v4.1 MSLLQTMAVPKPVSHLRSINDEPNFARFPAISHQNALHYEHNSRRFPCFSVSKKSDPESSSNPKMNSRGRTRRPKNEDGGKEGGEIFPTTIPRKPKRGRR SEAVAVEDFVRDSLERTFASIRQQNPDVLEEIMKDKVNENIDSETSDDDDEDDDEEEEEGGGEDGKGKGKKKKMVVEEESRDWPLDADVGWGVRASEYFE KHPIKNVVGEDGFEIDWEGEMEDNWVNEINCLDWERFAFHPSPLIVLVFERYSRATDNWKTLKELEKAAKVYRGAKDRLPPRTVKIDINIERDLAYALKV KECPQILFLRGNKILYREKEFRTADELVQMIAHFYYNAKKPSCVNNANLCP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G28590		MRL7	Mesophyll-cell RNAi Library li...		Potri.014G195600 [exp]	0	1
AT3G04260		PDE324, PTAC3	PIGMENT DEFECTIVE 324, plastid...		Potri.019G025100 [exp]	8.18	0.9140
AT2G19870			tRNA/rRNA methyltransferase (S...		Potri.018G087800 [exp]	21.02	0.9129
AT3G02060			DEAD/DEAH box helicase, putati...		Potri.014G145000 [exp]	22.31	0.9121
AT1G71720		PDE338	PIGMENT DEFECTIVE 338, Nucleic...		Potri.005G197900 [exp]	26.15	0.9120
AT1G80480		PTAC17	plastid transcriptionally acti...		Potri.001G201400 [exp]	26.94	0.8879
AT4G33760			tRNA synthetase class II (D, K...		Potri.009G084300 [exp]	29.15	0.8893
AT1G79080			Pentatricopeptide repeat (PPR)...		Potri.011G144300 [exp]	29.93	0.8853
AT5G48030		GFA2	gametophytic factor 2 (.1)		Potri.009G065500 [exp]	33.82	0.8352	GFA2.1
AT2G31530		EMB2289, SCY2	SECY HOMOLOG 2, EMBRYO DEFECTI...		Potri.002G053900 [exp]	36.05	0.8685
AT5G55580			Mitochondrial transcription te...		Potri.001G361800 [exp]	36.24	0.8955

Compare expression of checked genes

Potri.014G195600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.