Plant FIBer expression Database

Potri.014G195700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G20420 745 / 0 ATP citrate lyase (ACL) family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G259600
[exp]
788 / 0 AT2G20420 741 / 0.0 ATP citrate lyase (ACL) family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10008238
[exp]
762 / 0 AT2G20420 766 / 0.0 ATP citrate lyase (ACL) family protein (.1)
Lus10003620
[exp]
761 / 0 AT2G20420 763 / 0.0 ATP citrate lyase (ACL) family protein (.1)
Lus10022902
[exp]
194 / 1e-61 AT2G20420 196 / 8e-63 ATP citrate lyase (ACL) family protein (.1)
Lus10024923
[exp]
176 / 3e-54 AT2G20420 176 / 3e-55 ATP citrate lyase (ACL) family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0506 Succ_CoA_synth PF00549 Ligase_CoA CoA-ligase
CL0179 ATP-grasp PF08442 ATP-grasp_2 ATP-grasp domain
Representative CDS sequence
>Potri.014G195700.1 pacid=42762268 polypeptide=Potri.014G195700.1.p locus=Potri.014G195700 ID=Potri.014G195700.1.v4.1 annot-version=v4.1
ATGAGAGGATTATTAAACAAGCTCGTTTCTTGCTCTCTTTCCGTCGCTGGCAAATGGCAACACCAACAGCTCCGCCGCCTCAACATCCACGAATATCAGG
GAGCTGAATTGATGGGCAAATATGGGGTCAATGTCCCGAAAGGTGTAGCTGTCTCTTCTCTTGATGAGGTTAAAAAGGCTATCCAAGATGTATTTCCTGG
CGAAAGCGAGTTGGTGGTTAAGAGTCAAGTCCTGGCTGGTGGACGTGGATTAGGAAAATTTAAGAATGGTTTTCAGGGTGGAGTTCACATTGTTAAGGCA
GACAAGATTGAAGAAACAGCTGGAAAGATGCTTGGTCAGATACTTGTTACTAAACAAACTGGTTCCCAAGGCAAAATTGTCAGCAAGGTTTACCTGTGTG
AAAAGTTATCTCTTGTCAATGAGATGTACTTTGCTATCATGCTGGATCGTACTTCAGCTGGTCCACTTATCATTGCGTGTAAAAAGGGGGGAACCAGCAT
TGAAGACCTTGCTGAGAAATTTCCTGACTTGATTATTAAGGTCCCTATTGATGTATTTAAAGGAATTACTGATGAAGATGCTGCAAAAGTTGTAGATGGC
TTGGCTCCAAAGGTTGCTGATAGAAATAACTCGATTGAGCAAGTGAAGAAATTATATAAACTCTTCTGCGAGTGCGACTGCACATTGTTGGAAATCAATC
CCATTGCAGAGACTTCTGATAAGCAGTTGGTAGCTGCTGATGCTAAATTGAATTTTGATGATAATGCTGCATTTCGTCAGAAGGAGATATTTGCTCTCAG
AGATCCAACACAGGAGGATCCTAGAGAGGTGGCTGCTGCCATGGCAGATCTAAATTATATTGGTTTGGATGGAGAAATTGGTTGCATGGTGAATGGTGCA
GGATTAGCAATGGCTACAATGGATATAGTTAAACTGCATGGGGGAACCCCTGCAAATTTTCTAGATGTGGGTGGGAATGCTTCTGAAGGACAGGTGGTCG
AGGCATTTAAGATATTGACTTCTGATGACAAAGTAAAGGCAATTTTGGTGAATATATTTGGAGGAATAATGAAATGTGATGTGATAGCAAGCGGAATTGT
CAATGCTGCCAAACAGGTTGCTCTAAAAGTTCCAGTGGTTGTACGCCTTGAGGGCACTAATGTTGACCAAGGAAAGAGAATTCTGAAGGAGAGTGGAATG
GCACTAATCACAGCAGAAGATTTGGATGATGCTGCAAAGAAAGCAGTAAAAGCATCAGCTAGCTGA
AA sequence
>Potri.014G195700.1 pacid=42762268 polypeptide=Potri.014G195700.1.p locus=Potri.014G195700 ID=Potri.014G195700.1.v4.1 annot-version=v4.1
MRGLLNKLVSCSLSVAGKWQHQQLRRLNIHEYQGAELMGKYGVNVPKGVAVSSLDEVKKAIQDVFPGESELVVKSQVLAGGRGLGKFKNGFQGGVHIVKA
DKIEETAGKMLGQILVTKQTGSQGKIVSKVYLCEKLSLVNEMYFAIMLDRTSAGPLIIACKKGGTSIEDLAEKFPDLIIKVPIDVFKGITDEDAAKVVDG
LAPKVADRNNSIEQVKKLYKLFCECDCTLLEINPIAETSDKQLVAADAKLNFDDNAAFRQKEIFALRDPTQEDPREVAAAMADLNYIGLDGEIGCMVNGA
GLAMATMDIVKLHGGTPANFLDVGGNASEGQVVEAFKILTSDDKVKAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQGKRILKESGM
ALITAEDLDDAAKKAVKASAS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G20420 ATP citrate lyase (ACL) family... Potri.014G195700
[exp]
0 1
AT5G23250 Succinyl-CoA ligase, alpha sub... Potri.005G091400
[exp]
2.00 0.9060
AT2G17420 NTR2, ATNTRA, N... NADPH-DEPENDENT THIOREDOXIN RE... Potri.001G456800
[exp]
2.44 0.8881
AT5G08690 ATP synthase alpha/beta family... Potri.010G116600
[exp]
2.64 0.9109 PtrAtpB_1,ATP.1
AT1G20200 HAP15, EMB2719 HAPLESS 15, EMBRYO DEFECTIVE 2... Potri.004G176600
[exp]
6.32 0.8703
AT3G13920 RH4, TIF4A1, EI... eukaryotic translation initiat... Potri.006G225700
[exp]
8.94 0.8878 TIF4.1
AT3G02090 MPPBETA Insulinase (Peptidase family M... Potri.017G092400
[exp]
9.16 0.8995
AT3G15020 mMDH2 mitochondrial malate dehydroge... Potri.001G376500
[exp]
9.16 0.9050
AT1G78570 ATRHM1, RHM1, R... REPRESSOR OF LRX1 1, ARABIDOPS... Potri.001G383500
[exp]
14.49 0.8578
AT5G14800 EMB2772, AT-P5C... EMBRYO DEFECTIVE 2772, pyrroli... Potri.006G042600
[exp]
14.86 0.8783
AT2G20360 NAD(P)-binding Rossmann-fold s... Potri.002G255900
[exp]
15.90 0.8853

Potri.014G195700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.