Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G44070 543 / 0 ATPCS1, ARA8, CAD1 CADMIUM SENSITIVE 1, ARABIDOPSIS THALIANA PHYTOCHELATIN SYNTHASE 1, phytochelatin synthase 1 (PCS1) (.1) AT1G03980 518 / 0 ATPCS2 phytochelatin synthase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G195800 [exp] 606 / 0 AT5G44070 644 / 0.0 CADMIUM SENSITIVE 1, ARABIDOPSIS THALIANA PHYTOCHELATIN SYNTHASE 1, phytochelatin synthase 1 (PCS1) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003622 [exp] 572 / 0 AT5G44070 635 / 0.0 CADMIUM SENSITIVE 1, ARABIDOPSIS THALIANA PHYTOCHELATIN SYNTHASE 1, phytochelatin synthase 1 (PCS1) (.1) Lus10024921 [exp] 568 / 0 AT5G44070 627 / 0.0 CADMIUM SENSITIVE 1, ARABIDOPSIS THALIANA PHYTOCHELATIN SYNTHASE 1, phytochelatin synthase 1 (PCS1) (.1) Lus10008241 [exp] 473 / 9e-165 AT1G03980 514 / 0.0 phytochelatin synthase 2 (.1) Lus10038621 [exp] 112 / 4e-30 AT5G44070 109 / 8e-30 CADMIUM SENSITIVE 1, ARABIDOPSIS THALIANA PHYTOCHELATIN SYNTHASE 1, phytochelatin synthase 1 (PCS1) (.1) Lus10003623 [exp] 67 / 9e-13 AT5G44070 69 / 1e-13 CADMIUM SENSITIVE 1, ARABIDOPSIS THALIANA PHYTOCHELATIN SYNTHASE 1, phytochelatin synthase 1 (PCS1) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [poplar] [flax] Peptidase_CA PF05023 [poplar] [flax] Phytochelatin Phytochelatin synthase CL0125 [poplar] [flax] PF09328 [poplar] [flax] Phytochelatin_C Domain of unknown function (DUF1984)
Representative CDS sequence Show only first row Show all	>Potri.014G195900.2 pacid=42763922 polypeptide=Potri.014G195900.2.p locus=Potri.014G195900 ID=Potri.014G195900.2.v4.1 annot-version=v4.1 ATGGCGGTGGCAGGTTTCTACAGGAGAGCGCTTCCTTCTCCTCCTGCCATTGAGTTCGCTTCTCCAGAAGGCAAGCAACTGTTCACTGAGGCACTTGAAG GAGGGACCATGAATTCGTTTTTCAAATTAATATCTTACTATCAAACCCAGTCAGAGCCTGCCTACTGTGGACTTGCCAGCCTTGCCATGGTCTTAAATGC CCTAGCAATAGACCCTGGAAGAACATGGAAAGGCCCATGGAGATGGTTTGATGATTCAATGCTTGATTGTTGTGAACCCTTGGTTAAGATCAAAGAAAAA GGCATTACATTTGGGAAAGTTGCTTGCTTGGCTCATTGTAATGCAGCTAAAGTTGAAACTTTTAGGACAAATGAAATCACAGTTGATGGTTTTAGGAGAT TTGTGGTTTCTTGTAATTCTTCAGAGGATTATTATATCATTTCATCGTACCACAGAGGGGCTTTTAAACAGACTGGAAGTGGTCATTTCTCCCCAATTGG AGGCTATCATGCTGGAAAGGATATGGTTCTTATCTTGGATGTTGCCAGATTCAAATACCCACCTCACTGGGTTCCTCTTGAACTTCTTTGGGAGGCTATG AATACTATCGATAAAGCAACAGGACATCATAGGGGGTTCATGATACTTTCAAAGCTTGACAAAGCATCATCTATTCTTTATACTTTGAGCTGTAGGCACA AGGGTTGGAGCAGTGTTGCCAATTACTTGAGTGCAGATGTTCCCCACCTTCTGAAATCAGAGGATGTAAAGGATGTAGAGGAAGTACTCTCTGTTGTGTT TAAATCACCACCTGCTGACCTCAGAGAGTTCATCAAATGGGTTGCAGAAGTTCGGAGACAGGATGATGGGGGTATAATCTTAAGTGAAGAAGAGAAAGGA AGGCTTTCCATCAAGGAAGAGGTGTTGAAACAAGTACAAGGGACTGAACTATTTAAATATGTGACCAGATGGTTGATTTCTGAAATTTCAACATGTAAAG GCGCAATTTCAGGTCACAACAATGAATTGCCTGAAATTGCTGCAAATGTCTGCTGCCAAGGAGCAAAACTTTTGACTGAAAATTTCAGTTCACTGGATTG TATGGTCTTTAAGAAAGCAGGTGTGAAATTTTGGAAAAGTGATGGTGAAAAGCCTGTAACAGTGGTGTCAGGAACTGTGTTTACTGACGGCTCTGAACAA GGTGTTGATATGCTGGTTCCTTTATCTCAGACAGCGGCCAGCAGTTTGTGTGATCTAGATCAGAATGGTTGCCATGGATTCCATCCGTCTGCTGGAGATG TTTTATCAGTTCTCATATTTTCCCTACATCAAAATACATGGTCCAATATTAAAGATGAGAAACTTCAGGCAGAAATCAATTCTCTGGTATCAATTGACAA TGTCCCCCCTCTGCTTCAAGAGGAGGTTCTGCATCTACGGCGGCAGCTCCATTTCCTAACAATTGATATTGGCCTTGCATCTGCATCATGA
AA sequence Show only first row Show all	>Potri.014G195900.2 pacid=42763922 polypeptide=Potri.014G195900.2.p locus=Potri.014G195900 ID=Potri.014G195900.2.v4.1 annot-version=v4.1 MAVAGFYRRALPSPPAIEFASPEGKQLFTEALEGGTMNSFFKLISYYQTQSEPAYCGLASLAMVLNALAIDPGRTWKGPWRWFDDSMLDCCEPLVKIKEK GITFGKVACLAHCNAAKVETFRTNEITVDGFRRFVVSCNSSEDYYIISSYHRGAFKQTGSGHFSPIGGYHAGKDMVLILDVARFKYPPHWVPLELLWEAM NTIDKATGHHRGFMILSKLDKASSILYTLSCRHKGWSSVANYLSADVPHLLKSEDVKDVEEVLSVVFKSPPADLREFIKWVAEVRRQDDGGIILSEEEKG RLSIKEEVLKQVQGTELFKYVTRWLISEISTCKGAISGHNNELPEIAANVCCQGAKLLTENFSSLDCMVFKKAGVKFWKSDGEKPVTVVSGTVFTDGSEQ GVDMLVPLSQTAASSLCDLDQNGCHGFHPSAGDVLSVLIFSLHQNTWSNIKDEKLQAEINSLVSIDNVPPLLQEEVLHLRRQLHFLTIDIGLASAS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G44070		ATPCS1, ARA8, C...	CADMIUM SENSITIVE 1, ARABIDOPS...		Potri.014G195900 [exp]	0	1
AT1G21150			Mitochondrial transcription te...		Potri.001G035600 [exp]	1.41	0.8345
AT4G02510		TOC86, TOC160, ...	TRANSLOCON AT THE OUTER ENVELO...		Potri.008G225000 [exp]	4.89	0.8273
AT4G10925			Nuclear transport factor 2 (NT...		Potri.003G141600 [exp]	4.89	0.7893
AT4G01590			unknown protein		Potri.003G047600 [exp]	5.65	0.7817
AT1G16445			S-adenosyl-L-methionine-depend...		Potri.007G069400 [exp]	6.00	0.8135
AT1G13690		ATE1	ATPase E1 (.1)		Potri.008G097500 [exp]	8.48	0.8025	ATE1.2
AT3G13350	ARID		HMG (high mobility group) box ...		Potri.011G168800 [exp]	13.49	0.7872
AT3G18140			Transducin/WD40 repeat-like su...		Potri.016G052800 [exp]	13.71	0.8070
AT4G18260			Cytochrome b561/ferric reducta...		Potri.011G080300 [exp]	14.00	0.8022
AT1G65000			unknown protein		Potri.013G078866 [exp]	16.52	0.7889

Compare expression of checked genes

Potri.014G195900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.