Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G19440 855 / 0 KCS4 3-ketoacyl-CoA synthase 4 (.1) AT2G16280 790 / 0 KCS9 3-ketoacyl-CoA synthase 9 (.1) AT4G34510 699 / 0 KCS17, KCS2 3-ketoacyl-CoA synthase 17 (.1) AT2G26640 657 / 0 KCS11 3-ketoacyl-CoA synthase 11 (.1) AT1G68530 628 / 0 KCS6, CER6, POP1, G2, CUT1 POLLEN-PISTIL INCOMPATIBILITY 1, CUTICULAR 1, ECERIFERUM 6, 3-ketoacyl-CoA synthase 6 (.1.2) AT4G34520 625 / 0 KCS18, FAE1 FATTY ACID ELONGATION1, 3-ketoacyl-CoA synthase 18 (.1) AT1G04220 608 / 0 KCS2 3-ketoacyl-CoA synthase 2 (.1) AT1G25450 608 / 0 KCS5, CER60 ECERIFERUM 60, 3-ketoacyl-CoA synthase 5 (.1) AT5G43760 594 / 0 KCS20 3-ketoacyl-CoA synthase 20 (.1) AT2G15090 593 / 0 KCS8 3-ketoacyl-CoA synthase 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G116700 [exp] 845 / 0 AT1G19440 899 / 0.0 3-ketoacyl-CoA synthase 4 (.1) Potri.004G155600 [exp] 840 / 0 AT1G19440 899 / 0.0 3-ketoacyl-CoA synthase 4 (.1) Potri.018G032200 [exp] 673 / 0 AT2G26640 867 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.006G249200 [exp] 664 / 0 AT2G26640 886 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.010G125300 [exp] 637 / 0 AT1G68530 915 / 0.0 POLLEN-PISTIL INCOMPATIBILITY 1, CUTICULAR 1, ECERIFERUM 6, 3-ketoacyl-CoA synthase 6 (.1.2) Potri.008G160000 [exp] 633 / 0 AT2G26640 821 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.008G120300 [exp] 626 / 0 AT1G68530 895 / 0.0 POLLEN-PISTIL INCOMPATIBILITY 1, CUTICULAR 1, ECERIFERUM 6, 3-ketoacyl-CoA synthase 6 (.1.2) Potri.010G079400 [exp] 625 / 0 AT2G26640 793 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.010G079300 [exp] 624 / 0 AT2G26640 793 / 0.0 3-ketoacyl-CoA synthase 11 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001657 [exp] 847 / 0 AT1G19440 892 / 0.0 3-ketoacyl-CoA synthase 4 (.1) Lus10002533 [exp] 844 / 0 AT1G19440 890 / 0.0 3-ketoacyl-CoA synthase 4 (.1) Lus10026345 [exp] 833 / 0 AT1G19440 889 / 0.0 3-ketoacyl-CoA synthase 4 (.1) Lus10042318 [exp] 832 / 0 AT1G19440 890 / 0.0 3-ketoacyl-CoA synthase 4 (.1) Lus10043300 [exp] 648 / 0 AT2G26640 897 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Lus10019446 [exp] 647 / 0 AT2G26640 897 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Lus10034319 [exp] 628 / 0 AT1G68530 895 / 0.0 POLLEN-PISTIL INCOMPATIBILITY 1, CUTICULAR 1, ECERIFERUM 6, 3-ketoacyl-CoA synthase 6 (.1.2) Lus10041452 [exp] 624 / 0 AT1G25450 890 / 0.0 ECERIFERUM 60, 3-ketoacyl-CoA synthase 5 (.1) Lus10006637 [exp] 613 / 0 AT1G04220 819 / 0.0 3-ketoacyl-CoA synthase 2 (.1) Lus10012611 [exp] 596 / 0 AT1G01120 863 / 0.0 3-ketoacyl-CoA synthase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0046 [poplar] [flax] Thiolase PF08392 [poplar] [flax] FAE1_CUT1_RppA FAE1/Type III polyketide synthase-like protein CL0046 [poplar] [flax] Thiolase PF08541 [poplar] [flax] ACP_syn_III_C 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
Representative CDS sequence Show only first row Show all	>Potri.014G196200.1 pacid=42764584 polypeptide=Potri.014G196200.1.p locus=Potri.014G196200 ID=Potri.014G196200.1.v4.1 annot-version=v4.1 ATGGACTCCGGCGGCGAGATCCGGATCCACCAACAACGCGGGCTTCCAGATTTCTTACAAAGTGTAAATCTAAAGTACGTCAAATTAGGGTACCACTACT TAATCTCCAACCTACTAACCTTATGTTTTATTCCCTTAATCATAATTATCTCCATCGAATCCTCGCAAATGAATATCAAAGATCTCCGCCAATTATGGAT CCATCTTCAATACAATTTAGTCACGGTCATCACTTGCTCCGCTTTTCTCGTCTTCGGTTTCACCGTTTTCATTATGACCCGACCCAGACCCGTTTACTTA ATCGATTACTCCTGTTATCGCGCTCCGGATCATTTAAAAGCACCGTTTAATCAGTTCATGGAGCATTCGAGATTGACTGGAGACTTCGACGACACGTCGC TTGAGTTTCAACGCAAGATTTTGGAGCGGTCTGGGCTTGGAGAGGAGACTTATGTCCCTGAAGCGATGCATTACATTCCTCCTAGGCCGTCGATGGCAGC GGCTAGAGAAGAAGCTGAACAGGTTATGTTTGGTGCCTTGGATAATTTATTTACTAATACTCAAGTTAATCCTAAAAGTATTGGTATTCTTGTTGTTAAT TGTAGTTTATTTAATCCTACACCATCCCTTTCGGCAATGATTGTGAACAAGTATAGATTAAGGGGAAATATTAGGAGTTTTAATTTAGGTGGGATGGGTT GTAGTGCTGGTGTTATTGCAATTGATCTTGCTAAGGATATGTTACAAGTTCATAGGAATACTTACGCGGTCGTTGTGAGTACTGAGAACATTACTCAGAA TTGGTATTTTGGGAATAAAAAGTCTATGTTGATTCCCAATTGTTTGTTTCGAGTTGGGGGTTCGGCGGTTTTGCTTTCAAATGAGTCTGCTGATAAAAGG AAGGGTAAGTATAAGCTTGTTCATGTTGTGAGGACACATCGAGGAGCGGATGATAAGGCATTTCGTTGTGTATATCAAGAACAGGATGATGCGGGGAAGA CTGGTGTTTCGCTTTCGAAAGATTTGATGGCGATTGCGGGAGGGGCTTTGAAGACTAATATTACTACTCTGGGTCCTCTTGTGCTTCCGATTAGTGAGCA GCTTTTGTTCTTTGCAACTTTGGTGGTTAAGAAGTTATTAAATAAGAAGATGATGCCTTATATTCCGGATTTTAAGTTGGCGTTTGATCATTTCTGTATA CATGCTGGAGGGAGGGCTGTGATTGATGAGCTAGAAAAGAATTTGCAACTCTTGCCGGTGCATGTTGAGGCTTCTAGGATGACTCTGCACCGGTTTGGGA ATACTTCATCAAGTTCCATTTGGTATGAATTAGCCTATATTGAGGCTAAACAAAGGATGCAAAAGGGCAATCGTGTGTGGCAGATTGCATTTGGAAGTGG TTTTAAATGTAATAGTGCAGTGTGGGAGGCACTCAGAGATGTGAAGCCATCTTGTAATAGTCCCTGGGAAGATTGTATAGACATGTATCCGGTGAAGTTA GTTGCCTAG
AA sequence Show only first row Show all	>Potri.014G196200.1 pacid=42764584 polypeptide=Potri.014G196200.1.p locus=Potri.014G196200 ID=Potri.014G196200.1.v4.1 annot-version=v4.1 MDSGGEIRIHQQRGLPDFLQSVNLKYVKLGYHYLISNLLTLCFIPLIIIISIESSQMNIKDLRQLWIHLQYNLVTVITCSAFLVFGFTVFIMTRPRPVYL IDYSCYRAPDHLKAPFNQFMEHSRLTGDFDDTSLEFQRKILERSGLGEETYVPEAMHYIPPRPSMAAAREEAEQVMFGALDNLFTNTQVNPKSIGILVVN CSLFNPTPSLSAMIVNKYRLRGNIRSFNLGGMGCSAGVIAIDLAKDMLQVHRNTYAVVVSTENITQNWYFGNKKSMLIPNCLFRVGGSAVLLSNESADKR KGKYKLVHVVRTHRGADDKAFRCVYQEQDDAGKTGVSLSKDLMAIAGGALKTNITTLGPLVLPISEQLLFFATLVVKKLLNKKMMPYIPDFKLAFDHFCI HAGGRAVIDELEKNLQLLPVHVEASRMTLHRFGNTSSSSIWYELAYIEAKQRMQKGNRVWQIAFGSGFKCNSAVWEALRDVKPSCNSPWEDCIDMYPVKL VA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G19440		KCS4	3-ketoacyl-CoA synthase 4 (.1)		Potri.014G196200 [exp]	0	1
AT3G09880		ATB' BETA, ATB'...	Protein phosphatase 2A regulat...		Potri.006G122300 [exp]	2.82	0.8783
AT1G31130			unknown protein		Potri.015G125600 [exp]	6.48	0.8299
AT4G38040			Exostosin family protein (.1)		Potri.007G058400 [exp]	11.83	0.8339
AT2G18670			RING/U-box superfamily protein...		Potri.018G098100 [exp]	14.83	0.7778
AT5G12260			unknown protein		Potri.009G066900 [exp]	20.00	0.8544
AT5G43400			Uncharacterised conserved prot...		Potri.009G091400 [exp]	26.88	0.7516
AT1G07410		ATRAB-A2B, AtRA...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Potri.006G000300 [exp]	28.30	0.8234	RAB11.6
AT1G49590			C2H2 and C2HC zinc fingers sup...		Potri.009G105500 [exp]	34.08	0.7645
AT2G14740		VSR2;2, BP80-2;...	VACUOLAR SORTING RECEPTOR 3, V...		Potri.001G294400 [exp]	35.66	0.7787
AT4G38270		GAUT3	galacturonosyltransferase 3 (....		Potri.004G206000 [exp]	37.88	0.8014

Compare expression of checked genes

Potri.014G196200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.