Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G16250 742 / 0 Leucine-rich repeat protein kinase family protein (.1) AT4G39270 679 / 0 Leucine-rich repeat protein kinase family protein (.1.2) AT1G17230 223 / 3e-60 Leucine-rich receptor-like protein kinase family protein (.1) AT3G24240 223 / 3e-60 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT2G24230 200 / 2e-53 Leucine-rich repeat protein kinase family protein (.1) AT5G20480 167 / 2e-42 EFR EF-TU receptor (.1) AT2G26290 158 / 1e-41 ARSK1 root-specific kinase 1 (.1) AT1G20650 157 / 2e-41 ASG5 ALTERED SEED GERMINATION 5, Protein kinase superfamily protein (.1) AT1G61860 155 / 8e-41 Protein kinase superfamily protein (.1) AT1G10620 160 / 1e-40 AtPERK11 proline-rich extensin-like receptor kinase 11, Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G260100 [exp] 1321 / 0 AT2G16250 711 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G155100 [exp] 837 / 0 AT2G16250 921 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.009G116300 [exp] 800 / 0 AT2G16250 886 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.005G198000 [exp] 239 / 1e-65 AT1G34110 1381 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.011G139700 [exp] 228 / 8e-62 AT1G17230 1363 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.011G169600 [exp] 220 / 4e-59 AT1G55610 1500 / 0.0 BRI1 like (.1.2) Potri.001G052500 [exp] 208 / 2e-55 AT3G24240 1367 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.001G075000 [exp] 207 / 7e-55 AT4G20140 1371 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Potri.018G107400 [exp] 199 / 4e-53 AT2G24230 1153 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010823 [exp] 858 / 0 AT2G16250 717 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10023570 [exp] 775 / 0 AT2G16250 920 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10040455 [exp] 761 / 0 AT2G16250 914 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033533 [exp] 224 / 2e-60 AT4G39400 1492 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10011761 [exp] 215 / 6e-58 AT5G63930 913 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011756 [exp] 216 / 7e-58 AT3G24240 1455 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Lus10020835 [exp] 215 / 2e-57 AT4G39400 1486 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10008712 [exp] 204 / 3e-54 AT4G08850 1009 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10019036 [exp] 201 / 3e-53 AT4G08850 891 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10020936 [exp] 199 / 5e-53 AT4G08850 793 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.014G196600.1 pacid=42764592 polypeptide=Potri.014G196600.1.p locus=Potri.014G196600 ID=Potri.014G196600.1.v4.1 annot-version=v4.1 ATGAAAGGATTTCTTTTAGTCACAATCTTGGTGTTGCATCAGTGCACGTTGGGTCAGCAAGATTTCTTCAAGTCAAGAATTGAACGGTCGGCATTGCTTG ATCTCCGGTCGTCGTTGGGGATAAGAAGCACAGACTGGCCGATAAAATCCAACCCCTGCAAGAAATGGACAGGAATCCAGTGCAGAAACGGGCGGGTCAC TGGGATAAATATATCCGGGTTTAAGCGGACTCGGGCCGGGCGTTTAAACCCCAGTTTCAGTGTTGGTTCTTTGGCTAATTTGACTTTCTTGGAGTCTTTT AATGCTTCAGGGTTTTCACTTCCTGGTTCAATTCCGGATTGGTTTGGTTACCGGCTTGGTTCTTTGAAGGTTTTGGATCTCCGGTCTAGTTCAGTTACCG GGCCGATTCCTGCTTCGCTTGGTAATTTAACTGGACTCAATGCTTTATATCTAGCTAATAATGATCTTGCTGGTAGTATGCCTGCTGCATTGGGGCAGTT AATGCAATTATTAGTTCTTGATCTTTCAAGGAATTCACTTACTGGGCTAATTCCAAATGATTTTGGATTTCTTAGAAATCTATCATGCCTTGACCTTTCT TCGAATCACTTTTCTGGATCCATACCATCTACTTTTGGTAGTATTTCTGGGCTGCAATTCTTGAATGTATCTGATAATAGTCTTGTGGGTTCGGTGCCTG TTGAATTGGGCAATCTTTCTCACTTGGTTAAGCTTAATCTTGGTGTGAATGTGTTATCCGGGTCGTTGCCTGTAGAGTTTAGGCGGTTGAGGAATTTGGA AATGTTGGTGTTGAGGCATAATAGATTGGAGGGTAGATTGCCTGATGGTTTGTTTTCGAGTCTTGGTAAATTGAGAGTTTTGGAGTTGAGAGAGAATAAA TTTGATGGTGCTCTTCCCGGTGCGTTGTGGTCGTTGCGGAATTTGCAGGTTCTTGATGTTTCTGCTAATAATTTTACAGGTGATTTGTCAAACTTTAGTT TCAAGGGTCATGCCAGTGGTGCTGTGTTTAATCTTTCGAACAATCAGTTATATGGAACTACGGCTTGTTTATCTGGTAACTATACTTCCATTGATTTGTC TGGTAATTATTTCCAAGGAAAGGTTCCTCGTATTAGTCCAAGCAATGGTAGCCTTGACATGAACTGCCTTCAGGCGGTCCCTGATCAGAGAAGGTTGGAG GATTGTAGTTTGTTTTATGCTGGGAGAGGCTTAACTTTTGATTATTTTGGAAATCCAGAACCAAGACAGCAACTGTTACCAACTCCTGCCCCAAGGAGAC GCAAACAATGGATATACATTTTGGTGGTATTGCTTGGTGGAGTTGGTTTCCTTGCGTTTTTTATACTGGTGATAGTATTGGTCCTTAGGAAGTGTAATTA TGCCATTTCAAATGAAAGAGGAAGCGCAGATGTAGGGCCTGTTCCAGAGGGAGATAGCCCACCACTTCCTAAGGATCCTACTAGCGTATCTAGTCTGGGA GAGTCATTTACATACGCACAGTTGCGCAGTCTGACTGGTGAATTTAGTGAAAGAAATCTCATTAGACATGGTCACTCTGGAGATCTCTACCAGGGTTTTC TGGAAGGAGGAATTCCCATAGTTGTCAAAAGGATCAATTTGCATAGCTTGAAAAAGGATTCCTACGTGACTGAATTAGAGTTTTTCAGCAAGTATTCTCA TGCACGCTTGATCCCGCTTTTGGGACATTGTTTGGAAAACGAAAATCAGAAGCTTTTGGTGTACAAATATATGCCAAATGGAGACTTAGCTGAATCTTTG TTCAGGGTTACCAATTTTGACGACAATGGTTTGCAGTCCCTCGATTGGATCACGAGACTGAAAATTGCAATAGGAGCTGCTGAAGGCCTTTCTTACCTAC ACCACGAGTGTAACCCTCCCCTTGTTCATAGAGATGTTCAAGCGAGCAGTATCCTTCTTGATGATAAGTTTGAGGTTCGACTTGGAAGCTTGAGCGAGAT TCGCATCCACGAAGGGGATTCACACCAAAGTGTTCTCACAAGGTTCTTGCGGAAGTCCCAATCCTCTGTCTCTGATCCAGGAACTTCTGGCTCGTCCCCG ATTACTTGTGCACATGATGTGTATTGTTTTGGTAAGGTCTTGCTTGAGCTCGTTACGGGCAAGCTTGGCATCAGCAAATCAGATGATGCTACCACAAAAG AGTGGTTAGAACAGACGCTGGTGCAGATCAGTTTATATGACAAGGAACTGGTGGCAAAGATTGTTGACCCATCTCTGATCATAGATGAAGATTTATTGGA AGAGGTATGGGCAATGACCGTCGTGGCCAGGTCATGCCTTAATCCCAAACCTTCTAAACGTCCTCCGATGAAATATGTTCTCAAAGCATTGGAAAACCCT CTGAAAGTGGTGAGAGAGGACAGTTATAGCTCAGAGAGGCTGAGAACAACTTCATCTAGGAGATCTTGGAGTGCTGCTTTTTTTGGTAGTTGGAGACACA GCTCAGAAAATGTCACAGTTCTAGGCCATGCTAACCGAGAGGGGATCAGTGGCTTAAAGCAGCCAGTGAGAGTTGGATCTCAAGGCAGTGGTCGGATTGA GCATTCATCTTCTAATAAAAGGTTATCCAACGAAATTTTCCCTGAGCTGCTTGAAATGCAAGATATGGAGAGGCTAGATGAGCATTAG
AA sequence Show only first row Show all	>Potri.014G196600.1 pacid=42764592 polypeptide=Potri.014G196600.1.p locus=Potri.014G196600 ID=Potri.014G196600.1.v4.1 annot-version=v4.1 MKGFLLVTILVLHQCTLGQQDFFKSRIERSALLDLRSSLGIRSTDWPIKSNPCKKWTGIQCRNGRVTGINISGFKRTRAGRLNPSFSVGSLANLTFLESF NASGFSLPGSIPDWFGYRLGSLKVLDLRSSSVTGPIPASLGNLTGLNALYLANNDLAGSMPAALGQLMQLLVLDLSRNSLTGLIPNDFGFLRNLSCLDLS SNHFSGSIPSTFGSISGLQFLNVSDNSLVGSVPVELGNLSHLVKLNLGVNVLSGSLPVEFRRLRNLEMLVLRHNRLEGRLPDGLFSSLGKLRVLELRENK FDGALPGALWSLRNLQVLDVSANNFTGDLSNFSFKGHASGAVFNLSNNQLYGTTACLSGNYTSIDLSGNYFQGKVPRISPSNGSLDMNCLQAVPDQRRLE DCSLFYAGRGLTFDYFGNPEPRQQLLPTPAPRRRKQWIYILVVLLGGVGFLAFFILVIVLVLRKCNYAISNERGSADVGPVPEGDSPPLPKDPTSVSSLG ESFTYAQLRSLTGEFSERNLIRHGHSGDLYQGFLEGGIPIVVKRINLHSLKKDSYVTELEFFSKYSHARLIPLLGHCLENENQKLLVYKYMPNGDLAESL FRVTNFDDNGLQSLDWITRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSLSEIRIHEGDSHQSVLTRFLRKSQSSVSDPGTSGSSP ITCAHDVYCFGKVLLELVTGKLGISKSDDATTKEWLEQTLVQISLYDKELVAKIVDPSLIIDEDLLEEVWAMTVVARSCLNPKPSKRPPMKYVLKALENP LKVVREDSYSSERLRTTSSRRSWSAAFFGSWRHSSENVTVLGHANREGISGLKQPVRVGSQGSGRIEHSSSNKRLSNEIFPELLEMQDMERLDEH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G16250			Leucine-rich repeat protein ki...		Potri.014G196600 [exp]	0	1
					Potri.012G060751 [exp]	3.46	0.8482
AT1G61667			Protein of unknown function, D...		Potri.011G032600 [exp]	4.47	0.8423
AT5G22300		AtNIT4, NIT4	nitrilase 4 (.1)		Potri.006G207700 [exp]	13.85	0.8239
AT4G27490			3'-5'-exoribonuclease family p...		Potri.004G212500 [exp]	13.96	0.8236
AT4G08980		FBW2	F-BOX WITH WD-40 2 (.1.2.3.4.5...		Potri.002G099100 [exp]	16.12	0.8043
AT5G10080			Eukaryotic aspartyl protease f...		Potri.005G079900 [exp]	17.20	0.8119
AT2G18910			hydroxyproline-rich glycoprote...		Potri.018G090900 [exp]	17.66	0.7689
AT4G03210		XTH9, EXGT-A6, ...	xyloglucan endotransglucosylas...		Potri.019G125000 [exp]	18.52	0.8178	Pt-XTH9.1
AT2G38840			Guanylate-binding family prote...		Potri.005G217300 [exp]	22.51	0.8301
AT3G49250		IDN1, DMS3	INVOLVED IN DE NOVO 1, defecti...		Potri.002G172000 [exp]	30.00	0.8078

Compare expression of checked genes

Potri.014G196600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.