Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75210 869 / 0 HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase (.1) AT5G48960 214 / 3e-61 HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase (.1) AT2G23890 156 / 5e-41 HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G205900 [exp] 218 / 9e-63 AT5G48960 910 / 0.0 HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase (.1) Potri.010G002900 [exp] 212 / 2e-60 AT5G48960 902 / 0.0 HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase (.1) Potri.018G100600 [exp] 161 / 1e-42 AT2G23890 871 / 0.0 HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032712 [exp] 879 / 0 AT1G75210 900 / 0.0 HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase (.1) Lus10019962 [exp] 159 / 1e-40 AT2G23890 859 / 0.0 HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase (.1) Lus10015485 [exp] 130 / 2e-31 AT2G23890 790 / 0.0 HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [poplar] [flax] HAD PF05761 [poplar] [flax] 5_nucleotid 5' nucleotidase family
Representative CDS sequence Show only first row Show all	>Potri.014G196700.5 pacid=42764653 polypeptide=Potri.014G196700.5.p locus=Potri.014G196700 ID=Potri.014G196700.5.v4.1 annot-version=v4.1 ATGCGAATTCCAAAGAAGCCGGTTTCCTTTTGCCTTTCTCTTTTCTCTCCTGAATTTCCCCGTCCTTTCGATTCTCGAATTAGCTTCTTTTCGGGATTTC ATTATAAAACTCCTAACTTCTCCTTCGCTAAACCAAAGCAAATTCACTCCGCAGGAGTCAATCAGTTGCACATGAGCTATAAGATGGACAAGGGTCAGAA GGCTGTTTTAGCTGACCAGAGATTGAGCTCTGAGCTTATGGAGAGTAGGGATGGAGTTCAAGAACCATGCATATGGTCATCTCCTGAAGGGGGGAAAGAT GAAGCTGAACTTGGAAAACGGATCTTCTGCAATAGGTCATTGAACATGAGAAATATTATAGCTGTCGGCTTTGATATGGATTACACATTGGCACAGTATA AGCCTGAAACCTTTGAGAAACTTGCGTATGAAGGCACGATTGAAAAGTTGGTGTCTAATCTTGGCTATCCTGAAGAGTTGTTGGGCTGGACATTTAATTG GAAGTACATGGTCAGAGGATTGGTTGTAGATAAAAAGAGAGGCAATATCTTGAAGATGGATCGTCATAAATATGTGAAAGTGGCATACCATGGATTTAGA GAGTTGACCAAGGAAGAGAAAGTTGGCACCTATGGGAATACTCTGATACGAGATGCTTTTGACGAGCCAGATTATGCGCTTATTGATACTCTTTTCTCAT TAGCTGAAGCCTATTTGTTTTCCCAGCTTGTTGACTATATGGACAAAAACCCAGGAAGAGTTCCAGCAAGAGTAGACTATGCTCGCATGTACAAAGATGT TCGATCTGCTGTTGATATGTGCCATCGTGATGGAACTTTAAAGCAAATGGTAGCAAAAGATCCTATAAAGTACATCAACGAGGATAAGTCTATAGTTCCA CTTCTCAAAATGCTCAGGGATTCTCAACGGGCAACGTTCTTGGTAACAAATAGTTTATGGGACTATACAAATATTGTGATGAATTTTCTCTGCGAGTCCC GTACCCTCGATGCTTGCAACTTTGATTGGCTTCAGTACTTTGATGTTGTCATCACTGGCAGTGCAAAACCGGGATTTTTCCATGAAGAAAGTAATGCTAA TCTTTTTGAGGTTGAACCTGAATCTGGCAAGCTTATCAATACTGATAATGGAACTCCTATGGCTCAGGTTGGAAATACTTCACCTAGCATAACACTGAAG AAGCAAAATGAGCGTTGCAGGGTTTTCCAGGGAGGGACTGTTCGTCATCTGCATAAATTACTCTCAATTGGGTCAAGTTCACAGGTTCTGTATGTTGGGG ATCATATCTATGGAGATATTTTACGCAGCAAAAAAGTTCTCGGTTGGAGAACAATGCTTGTTGTTCCAGAGCTTGAGGCAGAGGTAAAACTGCTTTGGGA ACTAAGGGACTCACGCAAGGCACTTCAGTTGATGAGAAGTGACCGTGATCACATTGAAGATCAAATACATCGTCTAAGGTGGTCTCTTGACTTTGAAGAT CTTAAAGCCGATCAGAAGCAGGAGAAGTCTGCTTTGGTAGAGGATTTGGAGTTATTCAATGGTTTCTTTGAACAGCTCCAGAGGGATCACGTAAGAATCA AACATCAACAGGCTCAACGAGAATGTCACCAAAAGTTTCACAAGGTCTGGGGACAACTCATGAAGACGGGCTACCAAAACTCTCGCTTTGCACATCAGGT TGAGAGATTTGCCTGTCTTTATACCAGTCAAGTATCCAACTTAAGCCTTTACTCTCCAAACAAATACTATAGACCCGGTGAAGATTTCATGCCCCACGAA TTCAATATTCTTCCAATGTGA
AA sequence Show only first row Show all	>Potri.014G196700.5 pacid=42764653 polypeptide=Potri.014G196700.5.p locus=Potri.014G196700 ID=Potri.014G196700.5.v4.1 annot-version=v4.1 MRIPKKPVSFCLSLFSPEFPRPFDSRISFFSGFHYKTPNFSFAKPKQIHSAGVNQLHMSYKMDKGQKAVLADQRLSSELMESRDGVQEPCIWSSPEGGKD EAELGKRIFCNRSLNMRNIIAVGFDMDYTLAQYKPETFEKLAYEGTIEKLVSNLGYPEELLGWTFNWKYMVRGLVVDKKRGNILKMDRHKYVKVAYHGFR ELTKEEKVGTYGNTLIRDAFDEPDYALIDTLFSLAEAYLFSQLVDYMDKNPGRVPARVDYARMYKDVRSAVDMCHRDGTLKQMVAKDPIKYINEDKSIVP LLKMLRDSQRATFLVTNSLWDYTNIVMNFLCESRTLDACNFDWLQYFDVVITGSAKPGFFHEESNANLFEVEPESGKLINTDNGTPMAQVGNTSPSITLK KQNERCRVFQGGTVRHLHKLLSIGSSSQVLYVGDHIYGDILRSKKVLGWRTMLVVPELEAEVKLLWELRDSRKALQLMRSDRDHIEDQIHRLRWSLDFED LKADQKQEKSALVEDLELFNGFFEQLQRDHVRIKHQQAQRECHQKFHKVWGQLMKTGYQNSRFAHQVERFACLYTSQVSNLSLYSPNKYYRPGEDFMPHE FNILPM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G75210			HAD-superfamily hydrolase, sub...		Potri.014G196700 [exp]	0	1
AT2G20142			Toll-Interleukin-Resistance (T...		Potri.019G069733 [exp]	1.41	0.9027
AT2G30990			Protein of unknown function (D...		Potri.014G142800 [exp]	2.00	0.9064
AT2G37390		NAKR2	SODIUM POTASSIUM ROOT DEFECTIV...		Potri.006G213900 [exp]	2.82	0.8962
AT4G08850			Leucine-rich repeat receptor-l...		Potri.013G036600 [exp]	3.00	0.8974
AT2G28930		APK1B	protein kinase 1B (.1.2.3)		Potri.009G031300 [exp]	7.21	0.8645	APK1.1
AT1G34370	C2H2ZnF	STOP1	sensitive to proton rhizotoxic...		Potri.013G114600 [exp]	10.09	0.8747
AT4G16430	bHLH	bHLH003, INU3	basic helix-loop-helix (bHLH) ...		Potri.005G221100 [exp]	13.19	0.8524
AT3G04940		ATCYSD1	cysteine synthase D1 (.1)		Potri.005G048132 [exp]	13.74	0.8671
AT4G39090		EMB3005, RD19A,...	RESPONSIVE TO DEHYDRATION 19A,...		Potri.005G234000 [exp]	14.45	0.8587	Pt-VFCYSPRO.2
AT2G47390			Prolyl oligopeptidase family p...		Potri.002G196000 [exp]	15.16	0.8656

Compare expression of checked genes

Potri.014G196700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.