Plant FIBer expression Database

Potri.014G196800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G42765 232 / 2e-77 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10032714
[exp]
247 / 8e-83 AT5G42765 225 / 3e-74 unknown protein
PFAM info
Representative CDS sequence
>Potri.014G196800.1 pacid=42764634 polypeptide=Potri.014G196800.1.p locus=Potri.014G196800 ID=Potri.014G196800.1.v4.1 annot-version=v4.1
ATGGCAACAGCCGCATCTGCTTCCCTCTCACTTCTCCCTCCAAAACCCCAAATCTCCAGCAAACGACATGAAAATCAACGTCGTCTGCTCCTACACAAAC
TCTCTCGCAGAGACGCTGCCTTGCTCTCATTCCTCGCTCTCGTCCCTTCCGCTCCTGCTTCTGCCTTCTCCGTCGGCATCTCAGGACCGAAGGACTGGCT
GAAAGATCAAAAGAAGAAGACTGCGAAATATATATTGGCTCCTATCGATGCCTCCCGTGAAATCCTTCGCTCTGCCTATCTCTTGCTAACGGACAGTCAA
CCCGAATTTAAGGAAGAGAAATTAGAGGAAGTTCAAAGACTGTTAAAATCTGCCGCTAGGGATTGTGTTCCTCAAGATAGGAATTCGTTTGTTGCGTTTC
AGGCTAATACAGGAGTGGAGGTTTGCACGTTTCGTTTGATTGTGAAGAATGCTGCTTCCTTACTTGATAAAAACGACCCTGCAAAGTTGGAAGCAGAAGC
TATTTTGGATGATCTTATAAGATCTTTCACTTCCCTTGATGGTCTGGCGAATGAAGCTAATGTTCAACTTGCTTCTGACAGACAGAAGGTTGCTGATGCA
CTCATGAATACTATATCTTCACTTGATAAATTCGAGCAGGGAGTGAAGGACTGCCTTGAAGCTTGA
AA sequence
>Potri.014G196800.1 pacid=42764634 polypeptide=Potri.014G196800.1.p locus=Potri.014G196800 ID=Potri.014G196800.1.v4.1 annot-version=v4.1
MATAASASLSLLPPKPQISSKRHENQRRLLLHKLSRRDAALLSFLALVPSAPASAFSVGISGPKDWLKDQKKKTAKYILAPIDASREILRSAYLLLTDSQ
PEFKEEKLEEVQRLLKSAARDCVPQDRNSFVAFQANTGVEVCTFRLIVKNAASLLDKNDPAKLEAEAILDDLIRSFTSLDGLANEANVQLASDRQKVADA
LMNTISSLDKFEQGVKDCLEA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G42765 unknown protein Potri.014G196800
[exp]
0 1
AT1G48350 EMB3105 EMBRYO DEFECTIVE 3105, Ribosom... Potri.010G005000
[exp]
1.41 0.9815
AT2G45190 YABBY FIL, YAB1, AFO YABBY1, FILAMENTOUS FLOWER, AB... Potri.014G066700
[exp]
2.44 0.9698 Pt-AFO.1
AT1G13820 alpha/beta-Hydrolases superfam... Potri.010G158800
[exp]
4.00 0.9632
AT4G15510 Photosystem II reaction center... Potri.013G006500
[exp]
7.41 0.9515
AT3G26744 bHLH SCRM, ATICE1, I... SCREAM, A. THALIANA INDUCER OF... Potri.012G106000
[exp]
7.54 0.9243 ICE1.2
AT1G11290 CRR22 CHLORORESPIRATORY REDUCTION22,... Potri.005G151200
[exp]
8.94 0.9467
AT4G33110 S-adenosyl-L-methionine-depend... Potri.018G060000
[exp]
9.16 0.9172
AT5G04440 Protein of unknown function (D... Potri.010G230900
[exp]
12.96 0.9508
AT1G50900 LTD, GDC1 LHCP translocation defect, Gra... Potri.001G420900
[exp]
13.56 0.9545
AT1G11290 CRR22 CHLORORESPIRATORY REDUCTION22,... Potri.005G155000
[exp]
13.63 0.9388

Potri.014G196800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.