Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G47330 575 / 0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) AT2G14520 391 / 1e-131 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) AT4G33700 382 / 4e-128 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) AT5G52790 364 / 5e-120 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) AT4G14240 318 / 2e-102 CBS domain-containing protein with a domain of unknown function (DUF21) (.1), CBS domain-containing protein with a domain of unknown function (DUF21) (.2) AT4G14230 311 / 8e-100 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) AT1G03270 303 / 2e-96 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) AT1G55930 52 / 7e-07 CBS domain-containing protein / transporter associated domain-containing protein (.1) AT3G13070 51 / 2e-06 CBS domain-containing protein / transporter associated domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G288000 [exp] 421 / 3e-143 AT2G14520 620 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Potri.017G147900 [exp] 421 / 7e-142 AT5G52790 580 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Potri.009G082300 [exp] 404 / 1e-136 AT2G14520 593 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Potri.014G012400 [exp] 372 / 4e-124 AT2G14520 516 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Potri.010G030200 [exp] 325 / 8e-105 AT4G14240 611 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1), CBS domain-containing protein with a domain of unknown function (DUF21) (.2) Potri.008G202100 [exp] 321 / 2e-103 AT4G14240 632 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1), CBS domain-containing protein with a domain of unknown function (DUF21) (.2) Potri.002G260401 [exp] 55 / 2e-09 AT1G47330 58 / 3e-11 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Potri.001G362100 [exp] 50 / 6e-06 AT1G55930 858 / 0.0 CBS domain-containing protein / transporter associated domain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032715 [exp] 593 / 0 AT1G47330 646 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Lus10005259 [exp] 415 / 6e-141 AT2G14520 679 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Lus10027528 [exp] 411 / 3e-138 AT5G52790 560 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Lus10039289 [exp] 409 / 7e-138 AT5G52790 557 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Lus10030665 [exp] 357 / 2e-120 AT2G14520 498 / 3e-178 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Lus10012476 [exp] 345 / 1e-113 AT2G14520 591 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Lus10039288 [exp] 322 / 5e-104 AT5G52790 449 / 1e-154 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Lus10020494 [exp] 312 / 1e-101 AT2G14520 538 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Lus10012375 [exp] 310 / 3e-99 AT1G03270 627 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Lus10034024 [exp] 310 / 4e-99 AT4G14230 675 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01595 [poplar] [flax] DUF21 Cyclin M transmembrane N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.014G196900.1 pacid=42762501 polypeptide=Potri.014G196900.1.p locus=Potri.014G196900 ID=Potri.014G196900.1.v4.1 annot-version=v4.1 ATGAAGAAATCTGGCCGTGTGATCAAAATAAATTACGTACAAAAAAGGAAGAAAGAAAGAGTTGGCCGTGCGAGACAAACCAACCTGCCTGCAAAATTCA CCTCCAAACTCTCTGATAAAGAGCGGACAAGAAGACGAAGCAAGCACAGCACCTACCCGCAGAGAAAGAGAAAGATGGCATCTGACATAGGATGCTGTAG TAGCAAGTTTATGTTGTATATGGTAATAATAATAGGATTGGTGACTTTTGCTGGCCTGATGGCTGGCTTAACTCTTGGTCTCATGTCTTTGGGCCTTGTC GACCTTGAAGTCCTCATCAAGTCTGGCCGTCCTCAGGATCGCATCCACGCCGCTAAAATATTTCCAGTGGTAAAGAATCAGCATCTTTTGCTGTGCACTC TTTTGATCGGGAACTCTTTAGCAATGGAGGCTCTTCCTATATTCTTGGACAAGCTTGTTCCTCCTTGGGCTGCAGTATTGGCATCAGTGACTCTCATATT AATGTTTGGAGAGATATTGCCACAAGCAGTTTGTACTCGTTATGGCTTGACTGTTGGAGCAACGTTGGCGCCTCTTGTCCGTGTTCTTCTTTTGCTATTC TTTCCCATTTCTTATCCAATTAGCAAGGTTCTGGATTGGATGCTTGGCAAGGGACACGCTGTCCTTTTACGGAGAGCAGAGCTCAAAACTTTTGTTAATT TTCATGGCAATGAGGCAGGGAGAGGCGGGGACTTGACACATGATGAGACTACTATAATTACTGGTGCACTAGAATTGACTGAAAAGACTGCAAAAGATGC GATGACTCCCATATCGAAGGCATTTTCCCTTGATCTGGATGCAACTCTTAATTTGGAAACATTGAATGCAATAATGACGATGGGCCATAGTAGAGTTCCA GTTTATGCAGGAAAACCAACAAATATTATTGGACTTTTTCTGGTGAAGAACCTTTTAGCAGTTGATCCGGAAGATGCAGTTCCTCTAAAAAAAATGATCA TACGGAAAATTCCGCGGGTTTCTGAAGACTTGCCTCTATATGACATCCTAAATGAATTTCAGAAGGGTCACAGCCACATTGCTGTTGTATACAAAGATTT GAATGCTAATAAAGAGACACCAAAGAATGAGTTCAAGGACAGCTGCAGGAAGAGGGGCAAAACTGAAACATCACACGAGAAAGGTGATAGTGAGGTCGGC TCTACTTCTGCTATCCCAAATAAGAAGGCTGCTTTGGACTCGGATGATAATCAGACTGCTGCAACTAAGAATGATGGAGGCCAACAGATTAAGAAGAGTC CACCTTCTACTCCTCCTGCCTTTAAGAAGCGACACAAAGGTTGTTCATTTTGCATTTTGGACGTTGAGAAGGCTCCCATTCCTGAGTTCCCATCCAATGA AGAAGTTGTTGGTGTAATTACAATGGAGGATGTCATCGAAGAACTTCTTCAGGAGGAGATCTTGGATGAAACTGATGAGTACGTCAATATACACAACAGG ATAAAGATCAATATGCATGCATCTCAGGACAAGGCTCCCCAGTCAACTTCACTGCCATCTGCCAATGACGCATCTGTCACAGGCACTGCATCCCCAACAT CACTGTTGTCCATGGCTCCAACACCAACCCTTTCCGTCTCGAGTGGCACTTCGTTAACCAGCTCACCAACCACCACAAATCAAGTTTCCGAGGGAGACTC CTCAAAGAACCAATAA
AA sequence Show only first row Show all	>Potri.014G196900.1 pacid=42762501 polypeptide=Potri.014G196900.1.p locus=Potri.014G196900 ID=Potri.014G196900.1.v4.1 annot-version=v4.1 MKKSGRVIKINYVQKRKKERVGRARQTNLPAKFTSKLSDKERTRRRSKHSTYPQRKRKMASDIGCCSSKFMLYMVIIIGLVTFAGLMAGLTLGLMSLGLV DLEVLIKSGRPQDRIHAAKIFPVVKNQHLLLCTLLIGNSLAMEALPIFLDKLVPPWAAVLASVTLILMFGEILPQAVCTRYGLTVGATLAPLVRVLLLLF FPISYPISKVLDWMLGKGHAVLLRRAELKTFVNFHGNEAGRGGDLTHDETTIITGALELTEKTAKDAMTPISKAFSLDLDATLNLETLNAIMTMGHSRVP VYAGKPTNIIGLFLVKNLLAVDPEDAVPLKKMIIRKIPRVSEDLPLYDILNEFQKGHSHIAVVYKDLNANKETPKNEFKDSCRKRGKTETSHEKGDSEVG STSAIPNKKAALDSDDNQTAATKNDGGQQIKKSPPSTPPAFKKRHKGCSFCILDVEKAPIPEFPSNEEVVGVITMEDVIEELLQEEILDETDEYVNIHNR IKINMHASQDKAPQSTSLPSANDASVTGTASPTSLLSMAPTPTLSVSSGTSLTSSPTTTNQVSEGDSSKNQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G47330			CBS domain-containing protein ...		Potri.014G196900 [exp]	0	1
AT1G24560			unknown protein		Potri.010G049400 [exp]	1.41	0.7782
AT1G61690			phosphoinositide binding (.1)		Potri.011G032200 [exp]	11.18	0.5931
AT1G11480			eukaryotic translation initiat...		Potri.007G119200 [exp]	22.44	0.6383
AT3G17100	bHLH	bHLH147, AIF3	sequence-specific DNA binding ...		Potri.010G147400 [exp]	33.40	0.6557
AT5G23450		ATLCBK1	long-chain base (LCB) kinase 1...		Potri.010G255600 [exp]	36.64	0.5999
AT3G14067			Subtilase family protein (.1)		Potri.003G067000 [exp]	36.87	0.5967
AT3G47160			RING/U-box superfamily protein...		Potri.004G041200 [exp]	43.47	0.5633
AT4G16144		AMSH3	associated molecule with the S...		Potri.010G141100 [exp]	62.66	0.5725
AT4G25760		ATGDU2	glutamine dumper 2 (.1)		Potri.018G013600 [exp]	71.41	0.5610
AT1G13570			F-box/RNI-like superfamily pro...		Potri.017G107600 [exp]	82.75	0.5667

Compare expression of checked genes

Potri.014G196900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.