Plant FIBer expression Database

Potri.014G197100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G39740 471 / 4e-169 OLI7, RPL5B OLIGOCELLULA 7, ribosomal protein L5 B (.1.2)
AT3G25520 469 / 2e-168 PGY3, ATL5, OLI5, RPL5A RIBOSOMAL PROTEIN L5 A, PIGGYBACK3, OLIGOCELLULA 5, ribosomal protein L5 (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.019G099000
[exp]
523 / 0 AT5G39740 461 / 2e-165 OLIGOCELLULA 7, ribosomal protein L5 B (.1.2)
Potri.013G128600
[exp]
503 / 0 AT5G39740 422 / 6e-150 OLIGOCELLULA 7, ribosomal protein L5 B (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10043388
[exp]
487 / 1e-175 AT3G25520 471 / 2e-169 RIBOSOMAL PROTEIN L5 A, PIGGYBACK3, OLIGOCELLULA 5, ribosomal protein L5 (.1.2)
Lus10019544
[exp]
486 / 3e-175 AT3G25520 471 / 4e-169 RIBOSOMAL PROTEIN L5 A, PIGGYBACK3, OLIGOCELLULA 5, ribosomal protein L5 (.1.2)
Lus10004874
[exp]
473 / 5e-170 AT3G25520 464 / 1e-166 RIBOSOMAL PROTEIN L5 A, PIGGYBACK3, OLIGOCELLULA 5, ribosomal protein L5 (.1.2)
Lus10020612
[exp]
473 / 6e-170 AT3G25520 467 / 1e-167 RIBOSOMAL PROTEIN L5 A, PIGGYBACK3, OLIGOCELLULA 5, ribosomal protein L5 (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0267 S11_L18p PF00861 Ribosomal_L18p Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
CL0267 PF14204 Ribosomal_L18_c Ribosomal L18 C-terminal region
Representative CDS sequence
>Potri.014G197100.1 pacid=42763114 polypeptide=Potri.014G197100.1.p locus=Potri.014G197100 ID=Potri.014G197100.1.v4.1 annot-version=v4.1
ATGGCATTTGCCAAAGCCCAAAAGTCGAGAGCTTACTACAAGCGTTTTCAAGTGAAATTCAAGAGAAGACGAGAGGGCAAGACGGACTACAGGGCGAGGA
TACGTCTTATCAACCAGGACAAAAACAAATACAACACTCCAAAATACCGTTTTGTTATGCGATTTACTAACAAAGATATAACTGCACAAATCATACATGC
TAGCATGGCCGGTGATATTGTTGTTGCAGCTGCCTATTCCCATGAGCTACCCCGCTACGGCCTTGAAGTGGGTCTCACAAATTATGCAGCAGCTTACTGT
ACCGGGCTTCTCTTAGCCCGTCGAGTTCTGAAAAAGCTTGAGATGGATGAGGAGTATGAAGGAAATGTTGAGGCAACGGGAGAAGATTATTCTGTTGAAC
CAGCAGATAGCAGAAGGCCTTTCCGTGCTCTCCTTGATGTTGGTCTCGTGAGGACAACAACTGGGAATCGTGTTTTTGGTGCTCTTAAGGGAGCTTTGGA
TGGTGGACTTGATATTCCTCATAGCGACAAGAGGTTTGCTGGATTCAACAAGGATGGAAAACAGCTTGATGCTGAGGTTCACCGCAAGTACATTTATGGC
GGTCATGTTGCTGCGTATATGAGGAATCTGATGGAAGATGAGCCAGAGAAATATCAGTCTCATTTCAGTGAGTACATTAAGAGAGGCATTGAACCTGATA
ACATGGAGGAGCTGTACAAGAAGGTTCATGCTGCTATACGTGCAGACCCTACTGCAAAGAAGAGTGAGAAGCAACTTCCAAAGGAGCACAGGAGATACAA
CCTGAAGAAGCTGACCTACGAGGAAAGAAAGGCCAAGTTGGTTGAAAGGTTGAAGGCTCTCAATTCTGCTGCTGACGATGATGAAGATGATGAGTAA
AA sequence
>Potri.014G197100.1 pacid=42763114 polypeptide=Potri.014G197100.1.p locus=Potri.014G197100 ID=Potri.014G197100.1.v4.1 annot-version=v4.1
MAFAKAQKSRAYYKRFQVKFKRRREGKTDYRARIRLINQDKNKYNTPKYRFVMRFTNKDITAQIIHASMAGDIVVAAAYSHELPRYGLEVGLTNYAAAYC
TGLLLARRVLKKLEMDEEYEGNVEATGEDYSVEPADSRRPFRALLDVGLVRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFNKDGKQLDAEVHRKYIYG
GHVAAYMRNLMEDEPEKYQSHFSEYIKRGIEPDNMEELYKKVHAAIRADPTAKKSEKQLPKEHRRYNLKKLTYEERKAKLVERLKALNSAADDDEDDE

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G39740 OLI7, RPL5B OLIGOCELLULA 7, ribosomal prot... Potri.014G197100
[exp]
0 1
AT1G07070 Ribosomal protein L35Ae family... Potri.008G063200
[exp]
1.73 0.9257
AT2G44120 Ribosomal protein L30/L7 famil... Potri.006G073200
[exp]
2.00 0.9240
AT1G02780 EMB2386 embryo defective 2386, Ribosom... Potri.012G037500
[exp]
3.74 0.9299 Pt-RPL19.4
AT1G04170 EIF2 GAMMA, EIF... eukaryotic translation initiat... Potri.001G129100
[exp]
6.00 0.8942 EIF2.5
AT3G04770 RPSAB 40s ribosomal protein SA B (.1... Potri.015G112900
[exp]
7.74 0.9109 P40.4
AT3G05560 Ribosomal L22e protein family ... Potri.002G204100
[exp]
8.48 0.9020 RPL22.4
AT5G28060 Ribosomal protein S24e family ... Potri.013G036100
[exp]
10.72 0.8735 Pt-RPS24.2
AT5G27395 Mitochondrial inner membrane t... Potri.013G026700
[exp]
14.42 0.8718
AT1G72550 tRNA synthetase beta subunit f... Potri.018G070200
[exp]
15.36 0.8463
AT1G18850 unknown protein Potri.015G064300
[exp]
16.12 0.8886

Potri.014G197100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.