Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07560 172 / 2e-51 APM2, PEX13 ABERRANT PEROXISOME MORPHOLOGY 2, peroxin 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G018400 [exp] 167 / 1e-49 AT3G07560 149 / 9e-43 ABERRANT PEROXISOME MORPHOLOGY 2, peroxin 13 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016082 [exp] 155 / 3e-45 AT3G07560 162 / 4e-48 ABERRANT PEROXISOME MORPHOLOGY 2, peroxin 13 (.1) Lus10012306 [exp] 149 / 1e-42 AT3G07560 154 / 4e-45 ABERRANT PEROXISOME MORPHOLOGY 2, peroxin 13 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.014G197200.1 pacid=42763079 polypeptide=Potri.014G197200.1.p locus=Potri.014G197200 ID=Potri.014G197200.1.v4.1 annot-version=v4.1 ATGGACTCCAATTCCCAACAACCAGGTAGTAGCCCTCCTCCTAAACCGTGGGAACGAGCGGGAACATCATCATCTGGCCCTACACCTTTTAAACCGCCAT CCCCTGGAAGCACGAGTGACGTGGTTGAGGCATCTGGAACAACGAAACCGGGAGAAATTGTTCCTGCTACTGGTGGGAATACAGTTGCCACCGCAAATTC TTTTGGGAGACCTGTTCCCACTAGGCCCTGGGAGCAACAGAACGCTGGAACCATGTATTCGGGTTATAATAATGGGTACGGTACGGGAATGTATGGAAAT TCCTATGGTGGAATGTATGGCTCTTCGTATGGTGGAGCTGGAGGGTATAGTGGTGGGATGTATGGGAACAGTTCATATAGAGGAGGTTACGGGGGGGTGT ATAATGGAGGCATGTACGGTGGCGGTCTTGGTGGCGGTCTTGGTGGCGGTCTTGGTGGCGGTCTTGGTGGCGGTCTTGGTGGTGGTCTTGGTGGCGGTCT TGGTGGCCCAATGGGTGGTTATGGAGTGGGCATGGGTCCTTGCGGTGATCAAGATCCAAATAATCCCTTTGGTGCTCCACCGTCACCTCCAAGCTTTTGG GTTTCTTTTCTTCGAGTTATGCAAGGTGTTGTGAATGTTTTTGGCCGGATATCATTCTTGATTGACCAGAACACCCAGGCATTCCACATGTTCATGTCTG CCCTTCTTCAGCTCTTTGATCGCACAGGGTTATTGTATGGAGAGTTGGCTAGATTTGCTTTGAGATTGTTGGGAATCAAATCAAAGCCCCGGAAGGTTCA AGGGCCAGGACCTGATGGATTCCCTGTCCCCCATAACCCCCGTGGGAATCAGAACTACATTGAGGGGCCAAAGGCTGCTCCAAGTGGTGCATGGGATAAT GTATGGGGAAACGGTCCTAGCAACTGA
AA sequence Show only first row Show all	>Potri.014G197200.1 pacid=42763079 polypeptide=Potri.014G197200.1.p locus=Potri.014G197200 ID=Potri.014G197200.1.v4.1 annot-version=v4.1 MDSNSQQPGSSPPPKPWERAGTSSSGPTPFKPPSPGSTSDVVEASGTTKPGEIVPATGGNTVATANSFGRPVPTRPWEQQNAGTMYSGYNNGYGTGMYGN SYGGMYGSSYGGAGGYSGGMYGNSSYRGGYGGVYNGGMYGGGLGGGLGGGLGGGLGGGLGGGLGGGLGGPMGGYGVGMGPCGDQDPNNPFGAPPSPPSFW VSFLRVMQGVVNVFGRISFLIDQNTQAFHMFMSALLQLFDRTGLLYGELARFALRLLGIKSKPRKVQGPGPDGFPVPHNPRGNQNYIEGPKAAPSGAWDN VWGNGPSN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G07560		APM2, PEX13	ABERRANT PEROXISOME MORPHOLOGY...		Potri.014G197200 [exp]	0	1
AT5G61500		ATATG3	autophagy 3 (APG3) (.1)		Potri.001G126500 [exp]	1.73	0.8862
AT1G71800		CSTF64	cleavage stimulating factor 64...		Potri.002G061200 [exp]	4.89	0.8740
AT3G52950			CBS / octicosapeptide/Phox/Bem...		Potri.005G070500 [exp]	4.89	0.8482
AT4G24220		5[beta]-StR, 5[...	VEIN PATTERNING 1, Δ4,5-s...		Potri.014G019600 [exp]	5.19	0.8471
AT5G24810			ABC1 family protein (.1.2)		Potri.018G003400 [exp]	5.47	0.8917
AT4G12240	C2H2ZnF		zinc finger (C2H2 type) family...		Potri.003G114700 [exp]	5.47	0.8614
AT3G18650	MADS	AGL103	AGAMOUS-like 103 (.1)		Potri.010G181300 [exp]	5.47	0.8710
AT5G64460			Phosphoglycerate mutase family...		Potri.002G108500 [exp]	9.53	0.8508
AT5G18070		DRT101	DNA-DAMAGE-REPAIR/TOLERATION 1...		Potri.001G146900 [exp]	10.58	0.8231	Pt-DRT101.2
AT2G47820			unknown protein		Potri.010G023900 [exp]	11.35	0.8135

Compare expression of checked genes

Potri.014G197200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.