Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07570 402 / 5e-140 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1) AT3G61750 207 / 2e-63 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1) AT5G35735 116 / 5e-29 Auxin-responsive family protein (.1) AT5G47530 113 / 5e-28 Auxin-responsive family protein (.1) AT3G59070 111 / 4e-27 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1) AT4G17280 109 / 1e-26 Auxin-responsive family protein (.1) AT3G25290 109 / 1e-26 Auxin-responsive family protein (.1.2) AT2G04850 108 / 4e-26 Auxin-responsive family protein (.1) AT4G12980 94 / 5e-21 Auxin-responsive family protein (.1) AT5G48750 42 / 0.0004 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G098700 [exp] 219 / 1e-67 AT3G61750 402 / 2e-138 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1) Potri.006G015000 [exp] 118 / 1e-29 AT5G47530 513 / 0.0 Auxin-responsive family protein (.1) Potri.010G156200 [exp] 114 / 3e-28 AT5G47530 472 / 1e-166 Auxin-responsive family protein (.1) Potri.010G156600 [exp] 113 / 5e-28 AT5G47530 497 / 2e-176 Auxin-responsive family protein (.1) Potri.019G095800 [exp] 113 / 5e-28 AT5G47530 310 / 7e-103 Auxin-responsive family protein (.1) Potri.016G010900 [exp] 111 / 2e-27 AT5G47530 498 / 8e-177 Auxin-responsive family protein (.1) Potri.014G162000 [exp] 109 / 1e-26 AT5G47530 369 / 2e-126 Auxin-responsive family protein (.1) Potri.001G031600 [exp] 108 / 3e-26 AT5G47530 312 / 7e-104 Auxin-responsive family protein (.1) Potri.013G118300 [exp] 107 / 4e-26 AT5G47530 305 / 7e-101 Auxin-responsive family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016080 [exp] 373 / 3e-128 AT3G07570 397 / 9e-138 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1) Lus10001180 [exp] 363 / 2e-124 AT3G07570 377 / 5e-130 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1) Lus10012625 [exp] 217 / 8e-67 AT3G61750 400 / 7e-138 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1) Lus10010120 [exp] 197 / 3e-60 AT3G61750 343 / 5e-117 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1) Lus10012305 [exp] 175 / 2e-52 AT3G07570 165 / 8e-49 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1) Lus10012350 [exp] 124 / 7e-32 AT5G35735 418 / 3e-145 Auxin-responsive family protein (.1) Lus10001734 [exp] 108 / 2e-26 AT5G47530 422 / 9e-147 Auxin-responsive family protein (.1) Lus10017564 [exp] 108 / 3e-26 AT5G47530 419 / 8e-146 Auxin-responsive family protein (.1) Lus10006398 [exp] 106 / 5e-26 AT5G47530 276 / 2e-91 Auxin-responsive family protein (.1) Lus10002274 [exp] 105 / 2e-25 AT5G47530 432 / 4e-151 Auxin-responsive family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0328 [poplar] [flax] 2heme_cytochrom PF03188 [poplar] [flax] Cytochrom_B561 Eukaryotic cytochrome b561 CL0559 [poplar] [flax] CBD9-like PF03351 [poplar] [flax] DOMON DOMON domain
Representative CDS sequence Show only first row Show all	>Potri.014G197500.1 pacid=42764286 polypeptide=Potri.014G197500.1.p locus=Potri.014G197500 ID=Potri.014G197500.1.v4.1 annot-version=v4.1 ATGATGGCATCTTCCGTTATCTCCATCATCTTCTTCACCATATGTGGCTTAGCATTCTTTGTAAACTCTCAAGTAGATTCCTGCAATTCCAATCTAAACA TCAACAGCCTCCCTTTTGACTCAGCATCTCTCCACTGTGTCAGTGCTTGGAGTTCTCAGGATTTCATCCTTCGATACGCGCAGACTTCATCAAATTTATG GAGCTTTGTTCTGTCAGCACCAGATGCAAATAGTTACATAGCTATAGGGTTTTCAAGCAATGGTGTGATGATAGGATCCAGTGCTGTTGTGGGGTGGATA TCGGCAACTGATGGTTCTCCGACAGTAAAAAAGTATTTTCTGGGAGGGCAAAATTCAAAGGAAGTGGTACTTGACGGAGGAAACCTAGTAATTAACACTT CCATGATCGTAACTCAGTCTTCACGCCTGTATTTAGCCTTCCAGTTGAACACCGACCAGCCGGCGCCTCGGATAATTTATGCTCTCGGACCGACCGGTGT GATGCCTTCTTCTCCAAGCTTCTCCTTGACCCGGCACGCTGACATGGTCTCCACAACCTTGAATTATGTTACAGGTCAAACAAGCAATATCAATGTAAGG CCACAGTCAAGATTAAGGAAGAGCCATGGAGCATTGAACATGGTTGGCTGGGGCATTTTGATGATAATCGGAGCAATAGTTGCTCGCCATTTCAGGCAAT GGGATCCTGTGTGGTTCTACGTCCATATTTGCATTCAATCATTGGGATTTTTACTAGGCATAGCTGGTGTCATCTGCGGAATTATCCTTGAAAATCGTCT TGGTGCTGATGTCTCCACCCACAAGGGTCTTGGGGTCTTCCTTCTTGTTCTTGGATGCCTTCAGGTGATGGCATTTTTGGCTCGACCAGAGAAGTCGTCA AAGGTAAGGAAGTACTGGAATTGGTACCACTACAGTGTGGGGAGGATTTTGATTATATTTGCAGTAGCAAATGTCTTCTATGGAATCCATTTAGGTAAAG AGGGACGAGAATGGAAGGGTGGCTATGGAGGTGTTCTTGCTATCTTGTTTGTAATTGCTCTTATTTTAGAGGTGCGAATGTGGATGAAAAAATGA
AA sequence Show only first row Show all	>Potri.014G197500.1 pacid=42764286 polypeptide=Potri.014G197500.1.p locus=Potri.014G197500 ID=Potri.014G197500.1.v4.1 annot-version=v4.1 MMASSVISIIFFTICGLAFFVNSQVDSCNSNLNINSLPFDSASLHCVSAWSSQDFILRYAQTSSNLWSFVLSAPDANSYIAIGFSSNGVMIGSSAVVGWI SATDGSPTVKKYFLGGQNSKEVVLDGGNLVINTSMIVTQSSRLYLAFQLNTDQPAPRIIYALGPTGVMPSSPSFSLTRHADMVSTTLNYVTGQTSNINVR PQSRLRKSHGALNMVGWGILMIIGAIVARHFRQWDPVWFYVHICIQSLGFLLGIAGVICGIILENRLGADVSTHKGLGVFLLVLGCLQVMAFLARPEKSS KVRKYWNWYHYSVGRILIIFAVANVFYGIHLGKEGREWKGGYGGVLAILFVIALILEVRMWMKK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G07570			Cytochrome b561/ferric reducta...		Potri.014G197500 [exp]	0	1
AT3G04090		SIP1A, SIP1;1	small and basic intrinsic prot...		Potri.013G053400 [exp]	2.44	0.8154	SIP1.3
AT4G01070		UGT72B1, GT72B1	UDP-GLUCOSE-DEPENDENT GLUCOSYL...		Potri.014G096000 [exp]	3.46	0.7646	Pt-ADGT.3
AT5G23810		AAP7	amino acid permease 7 (.1.2)		Potri.011G167532 [exp]	3.74	0.7572
AT1G08800			Protein of unknown function, D...		Potri.019G012200 [exp]	4.00	0.7522
AT5G02090			unknown protein		Potri.006G090100 [exp]	4.00	0.7855
AT1G26610	C2H2ZnF		C2H2-like zinc finger protein ...		Potri.010G159600 [exp]	4.24	0.7502
AT1G58120			unknown protein		Potri.007G113200 [exp]	5.29	0.7302
AT1G15950		IRX4, ATCCR1, C...	IRREGULAR XYLEM 4, cinnamoyl c...		Potri.003G181400 [exp]	8.66	0.7835	CCR.10,CCR7
AT4G31860			Protein phosphatase 2C family ...		Potri.018G017701 [exp]	10.00	0.7474
AT3G02430			Protein of unknown function (D...		Potri.003G008600 [exp]	12.24	0.7284

Compare expression of checked genes

Potri.014G197500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.