Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12780 329 / 7e-98 Chaperone DnaJ-domain superfamily protein (.1.2) AT4G12770 324 / 5e-96 Chaperone DnaJ-domain superfamily protein (.1.2) AT1G21660 254 / 2e-74 Chaperone DnaJ-domain superfamily protein (.1) AT4G36520 233 / 6e-63 Chaperone DnaJ-domain superfamily protein (.1) AT1G75310 205 / 7e-54 AUL1 auxilin-like 1, auxin-like 1 protein (.1) AT1G75100 135 / 2e-32 JAC1 J-domain protein required for chloroplast accumulation response 1 (.1) AT1G30280 97 / 6e-21 Chaperone DnaJ-domain superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G217200 [exp] 711 / 0 AT4G12780 319 / 2e-94 Chaperone DnaJ-domain superfamily protein (.1.2) Potri.002G079200 [exp] 272 / 2e-80 AT1G21660 351 / 2e-115 Chaperone DnaJ-domain superfamily protein (.1) Potri.005G181700 [exp] 252 / 3e-73 AT1G21660 312 / 3e-100 Chaperone DnaJ-domain superfamily protein (.1) Potri.005G120700 [exp] 246 / 6e-67 AT4G36520 299 / 1e-82 Chaperone DnaJ-domain superfamily protein (.1) Potri.007G022600 [exp] 238 / 2e-64 AT4G36520 306 / 7e-85 Chaperone DnaJ-domain superfamily protein (.1) Potri.005G229300 [exp] 216 / 2e-57 AT4G36520 248 / 1e-66 Chaperone DnaJ-domain superfamily protein (.1) Potri.002G033800 [exp] 208 / 1e-54 AT4G36520 241 / 4e-64 Chaperone DnaJ-domain superfamily protein (.1) Potri.014G042600 [exp] 146 / 6e-36 AT1G75100 261 / 2e-77 J-domain protein required for chloroplast accumulation response 1 (.1) Potri.002G134300 [exp] 137 / 4e-33 AT1G75100 192 / 3e-52 J-domain protein required for chloroplast accumulation response 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016079 [exp] 358 / 2e-108 AT4G12770 664 / 0.0 Chaperone DnaJ-domain superfamily protein (.1.2) Lus10012303 [exp] 357 / 5e-108 AT4G12770 618 / 0.0 Chaperone DnaJ-domain superfamily protein (.1.2) Lus10012302 [exp] 363 / 1e-105 AT4G12750 911 / 0.0 Homeodomain-like transcriptional regulator (.1) Lus10016078 [exp] 325 / 9e-93 AT4G12750 723 / 0.0 Homeodomain-like transcriptional regulator (.1) Lus10018854 [exp] 229 / 3e-64 AT1G21660 402 / 5e-134 Chaperone DnaJ-domain superfamily protein (.1) Lus10028548 [exp] 226 / 7e-63 AT1G21660 402 / 1e-133 Chaperone DnaJ-domain superfamily protein (.1) Lus10041769 [exp] 226 / 2e-60 AT1G75310 328 / 3e-92 auxilin-like 1, auxin-like 1 protein (.1) Lus10024270 [exp] 184 / 4e-47 AT1G75310 290 / 2e-80 auxilin-like 1, auxin-like 1 protein (.1) Lus10007394 [exp] 182 / 2e-46 AT4G36520 284 / 2e-78 Chaperone DnaJ-domain superfamily protein (.1) Lus10033205 [exp] 176 / 2e-44 AT1G75310 259 / 3e-70 auxilin-like 1, auxin-like 1 protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.014G197600.1 pacid=42762424 polypeptide=Potri.014G197600.1.p locus=Potri.014G197600 ID=Potri.014G197600.1.v4.1 annot-version=v4.1 ATGGATGATTTTCCAGGTCTGTTAGCTCGCGACTTCGGGTACAAACCCCAAGGCAAATCGGCACCCATGGCTCCACCTCGGAACACAAACAGTGATAATA CTAATTTTAACCTTGGATCCGGTGGCTCCGTTCACATCCGATCCTCCATCTCCAACAAATCCGCTCCTATTTTCGACGATCACGTCGGCACCGACGGTCT CTTGTTCAACAACGCCTTCGATGGTCCGCTGAAGTATTCAGAATCGCGTGGCGGAGCTTCCACTACTACATCGTCATTTGATTATGATTCCATTTTCAAG GATCAGAATTCCAAATCGGCGTCGCTGCCGGTTTTTGATAAGCCTGTTTATGATGATGATATTTTTGATGGATTGCCTGGGTTGAAGAATTCGTCTACTG ATGGTGGTTCTGCATCGGCTGCTCCCAAGTTTGATAATGTGTTTGCTTCCGTCAGTTCACCACCGAACCAGCATCGAAGGCCGCCTGCGAGAGAGAGTTC GCCGTTCGATGATCTGTTGGGGAACTTAGGCAAAAAGGAGACGGAATCGAAGACAGAAAGTCGTAAAGTGGAAATGGATTCGACGGCTTTTGATGATTTA CTTCCTGGTTTTGGTGGCAGTAGCTCCCCTAGTGTTAACCGGTCAACTTCCGAGTCTGGTCAGTTCCAAAAGCCATCTTCAAATTCAGCCAGGCCAGTTC CTGGTGTGATGGAAGATCTCTTTGTAGTCCTAGAGTCAACTTCAACCCCTCCAACTTCATCATCGGGGCTGTTCACAGACCCATTGGAAGAAATTAGTAA AATCAGTAACACTGGAAGCACTAAGATTAATAGTTCATCTGTAAATATGGCAGTATTTGATGACCTAGATCACCTTAATGATCTTGGGAAATCTGTGCCT CCTGAGATCAACAAGGGAGGGGAGAATAGGAGCCCTTTAAGAACAAGATCAAGCTCAGGTGGTGCATATTCCTCTGTGAGTAAAGAATCAGTTAACAAAT ATCCCTTGGAGAATGCTGTGGGCCACTCGCAGAAGAAGACACCAGATGATTATCAGGAATCTCATGAAGCCATATTTGATATGCCTGCTGCTTCAACAGA TTTTCGTAGATCTTTTGGTCAAAATGTCTCTCCTCCTTCATATGTGGATATCAATGCTAATGAGATAAATTCCTCTCCCAGATCTGAAGAGGTCTCTGAA TCATCTGATGATGTATGGCTTACTGTGTCTGAAATCCCTCTTTTTACTCAACTCACAAGTGCACCACCGCCTTCAAGACCCCCACCTCCGAGACCACCAC GAATATCAAAGTCAGAGTTTGGCTCTGTTTCTTCTACAAACTCTAGAAAGAAGTTCAATGAGTATCCTTCTTTCCAAAATTCCACTTCGTACTCTCAAAA TACTAGACCAGACCATGCTTCAAGGAATTCAGTGACTTCTCAAATTGATGAACTTGAGGATTTTGTAACGGTAAGGAATCAAAATAATGTTAATGAATTT GCAGACGTTCTACCTGGTGATGATGCAGATAAAACTTCCTCTTCTGCTGCTTCTGCTGCTATGAAGGAGGCCGTGGATAAAGCAGAGGCTAAATTCCGCC AAATGAGGGAGAGGGAATATCTAAAGGCTGCTAGAAACAAAGAAGCTGGTCAGCTGGATAAAGATATGCAAGATGCTCAGCAGAGAGAATTAAAGGAAAG ACATGAGAGATTTGATCGTGAGAGACAACAGAGGGAAAAGGAGGAGGAAGAGAGAGAGCAGAGAAGATTTGAGAAAGAGAGGGAGAGGGCTCGTGAAATT GAGAGGGAAAGGGAGGAAAAAGAAAGAGAGCAAAGGAGGCTTGAAAGAGAGAGGGAGCGAGCAAGGGAGATTGAGAGAGAAAGGGAAAAGGGCAGACAAG CAGTGGAAAGGGCTACTAGAGAGGCACGTGAAAGAGCAGCTACTGATGCTCGCCTGAAAGCTGAAAGGTCTGCTGTGGAAAAAGTATCTGCTGGGGCTCG AGAAAGAGCTGAAAGGTCTGCTGTGGAAAAAGTATCTGCTGGGGCTCGAGAAAGAGCAGAAAGGGCTGCTGTGCAGAGAGCACATGCTGAAGCACGTGAA AGGGCAGCAGCAGAGGCAAAAGAAAGGGCAGAAAAGGCTGCTGCAGAAGCCCGGGAAAGGGCAAATGCTGAAGTTAGGGAGAGGGAAGCCCGGGAAAGAG CTGCTGTTGCAAGGGCTGAAGCTGATGCTCGACTTAGAGCAGAACGAGCTGCTGTAGAAAGAGCTGCTGCAGAGGCTCGAGAGAGGGCTGCCGCTGCCGC CAGGGCAAATCAACAAAAGAGTGAAAATGATCTCGAATCATTCTTCAGTGCTCGAGCAACCAGTGCACAAAGACCTAGGACAAACACTTTGGATCCTTTC TCTGACAGCCAGAACAAGGGAGGGCCTGAACCAGTTAGAAGGACATCTGTTGGGGCTACGTCTAGCGTGAGAAAAACATCTTCAACAACAAATGTTGTTG ATGATTTAACTTCGATTTTTGGAGGAGGTACTGGATCATCTGGAGAGTTCCAAGATGTTGAAGGGGAAACTGAAGAAAGGCGAAAAGCCCGATTGGAACG CCACCAGAGGACTCAGGAGCGGGCTGCAAAAGCACTGGCCGAGAAGAATCAACGTGACCTTCAAGCTCAGAGAGATCAAGCAGAGAGACATAGGATTGCT GAAACATTGGATGTTGAGATCAAGCGTTGGGCTGCAGGAAAAGAGGGGAATCTCCGTGCTCTGCTATCAACACTACAATATGTGCTATGGCCTGAATGTG GATGGCAGCCTGTTTCCTTGACCGATTTGATCACTGGTGCTGCGGTTAAAAAAGTTTATAGAAAAGCAACCTTATGCATTCATCCTGATAAAGTGCAACA AAAAGGCGCCAATCTTCAACAAAAATACGTTGCTGAGAAAGTGTTTGACTTACTTAAGGAAGCATGGAACAAGTTAAATTCAGAAGAGCTTTTCTGA
AA sequence Show only first row Show all	>Potri.014G197600.1 pacid=42762424 polypeptide=Potri.014G197600.1.p locus=Potri.014G197600 ID=Potri.014G197600.1.v4.1 annot-version=v4.1 MDDFPGLLARDFGYKPQGKSAPMAPPRNTNSDNTNFNLGSGGSVHIRSSISNKSAPIFDDHVGTDGLLFNNAFDGPLKYSESRGGASTTTSSFDYDSIFK DQNSKSASLPVFDKPVYDDDIFDGLPGLKNSSTDGGSASAAPKFDNVFASVSSPPNQHRRPPARESSPFDDLLGNLGKKETESKTESRKVEMDSTAFDDL LPGFGGSSSPSVNRSTSESGQFQKPSSNSARPVPGVMEDLFVVLESTSTPPTSSSGLFTDPLEEISKISNTGSTKINSSSVNMAVFDDLDHLNDLGKSVP PEINKGGENRSPLRTRSSSGGAYSSVSKESVNKYPLENAVGHSQKKTPDDYQESHEAIFDMPAASTDFRRSFGQNVSPPSYVDINANEINSSPRSEEVSE SSDDVWLTVSEIPLFTQLTSAPPPSRPPPPRPPRISKSEFGSVSSTNSRKKFNEYPSFQNSTSYSQNTRPDHASRNSVTSQIDELEDFVTVRNQNNVNEF ADVLPGDDADKTSSSAASAAMKEAVDKAEAKFRQMREREYLKAARNKEAGQLDKDMQDAQQRELKERHERFDRERQQREKEEEEREQRRFEKERERAREI EREREEKEREQRRLERERERAREIEREREKGRQAVERATREARERAATDARLKAERSAVEKVSAGARERAERSAVEKVSAGARERAERAAVQRAHAEARE RAAAEAKERAEKAAAEARERANAEVREREARERAAVARAEADARLRAERAAVERAAAEARERAAAAARANQQKSENDLESFFSARATSAQRPRTNTLDPF SDSQNKGGPEPVRRTSVGATSSVRKTSSTTNVVDDLTSIFGGGTGSSGEFQDVEGETEERRKARLERHQRTQERAAKALAEKNQRDLQAQRDQAERHRIA ETLDVEIKRWAAGKEGNLRALLSTLQYVLWPECGWQPVSLTDLITGAAVKKVYRKATLCIHPDKVQQKGANLQQKYVAEKVFDLLKEAWNKLNSEELF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G12780			Chaperone DnaJ-domain superfam...		Potri.014G197600 [exp]	0	1
AT4G12780			Chaperone DnaJ-domain superfam...		Potri.002G217200 [exp]	1.00	0.9198
AT2G44730	Trihelix		Alcohol dehydrogenase transcri...		Potri.003G083800 [exp]	1.41	0.8631
AT3G15470			Transducin/WD40 repeat-like su...		Potri.011G122500 [exp]	2.82	0.8020
AT3G15470			Transducin/WD40 repeat-like su...		Potri.001G403400 [exp]	3.46	0.8112
AT4G32760			ENTH/VHS/GAT family protein (....		Potri.018G039100 [exp]	4.24	0.7765
AT5G22760			PHD finger family protein (.1)		Potri.004G189600 [exp]	4.69	0.7722
AT1G11480			eukaryotic translation initiat...		Potri.007G119200 [exp]	4.89	0.7648
AT3G51770		ATEOL1, ETO1	ARABIDOPSIS ETHYLENE OVERPRODU...		Potri.016G123800 [exp]	5.38	0.7197
AT2G25760			Protein kinase family protein ...		Potri.001G189100 [exp]	5.47	0.7897
AT4G32620			Enhancer of polycomb-like tran...		Potri.006G246200 [exp]	9.74	0.7997

Compare expression of checked genes

Potri.014G197600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.