Plant FIBer expression Database

Potri.014G197700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G12760 263 / 2e-88 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10001181
[exp]
295 / 1e-100 AT4G12760 221 / 9e-72 unknown protein
Lus10043073
[exp]
0 / 1 ND 54 / 4e-10
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF14766 RPA_interact_N Replication protein A interacting N-terminal
PF14767 RPA_interact_M Replication protein A interacting middle
PF14768 RPA_interact_C Replication protein A interacting C-terminal
Representative CDS sequence
>Potri.014G197700.1 pacid=42764420 polypeptide=Potri.014G197700.1.p locus=Potri.014G197700 ID=Potri.014G197700.1.v4.1 annot-version=v4.1
ATGGAAGACAGAACGGAAAATGATTCAGCCCCAACATCGAAACGACAGTCTCTTAGAACCCAATCAATTTTCAACGGTTACCCCTCTTGGAAAAACAAGC
TGAGGGAAAACTGTTACAAAAGAGTGCGTGAAGAGAGGACCCGATTGCTCTGGAAAATGAGGTTGCCCCCTGCTAAATCTTTAGATAATAAGGATATCAT
CAAGTATGCTCTCCAGGACATAGTTTCTGATGAACTGGAAAAAATTAAGAACTCGTCGTCGTCGTCGTTAAACGAACAGTTGAAAATTCCAACTCGTGCC
CTTGAGGCGAATGATGATATGTTGTGGGAATATGATGGTCTTCATGATGCTTATCAAGGCGAGTGCGAAGAGATATTGTTAGAAATGCAAAAGATCTTCT
ATGAAGATCTTAGGGATGAGACAACTAGAGAAGAACCAAAAAACTATATTGAAACCTGGGAGGACAAAGAAGATGATTACTTGGCTCATGCTGTTTATGA
GCACATGCAATTGAGTGATAAGAAGGTGGCCAAGGAGATCTGGTGTCCCATATGTAAGCAAGGAAAGTTGCAAGAGAACCATCAGCGCATATATTGCACT
CTCTGTGAACTTAAACTCAATAAAGGCGATGAGATTAATCTGGACGTGTTGCAGATCCGACTGGGAGGAGCCCACGACGAACACCTTGACCGTGGCTGTA
GATTGAAACCAAAGTTTTGCATTGAAACTAGATTTGGTCTAACTGCATTGTTTATTGTTTGTCAGGATTGCAGCACCTTTGAGGTGGTTATATAG
AA sequence
>Potri.014G197700.1 pacid=42764420 polypeptide=Potri.014G197700.1.p locus=Potri.014G197700 ID=Potri.014G197700.1.v4.1 annot-version=v4.1
MEDRTENDSAPTSKRQSLRTQSIFNGYPSWKNKLRENCYKRVREERTRLLWKMRLPPAKSLDNKDIIKYALQDIVSDELEKIKNSSSSSLNEQLKIPTRA
LEANDDMLWEYDGLHDAYQGECEEILLEMQKIFYEDLRDETTREEPKNYIETWEDKEDDYLAHAVYEHMQLSDKKVAKEIWCPICKQGKLQENHQRIYCT
LCELKLNKGDEINLDVLQIRLGGAHDEHLDRGCRLKPKFCIETRFGLTALFIVCQDCSTFEVVI

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G12760 unknown protein Potri.014G197700
[exp]
0 1
AT4G24470 GATA GATA25, TIFY1, ... Zinc-finger protein expressed ... Potri.005G152800
[exp]
1.41 0.9040
AT4G11980 ATNUDX14, ATNUD... ARABIDOPSIS THALIANA NUDIX HYD... Potri.003G118300
[exp]
3.00 0.8956
AT3G15351 unknown protein Potri.002G142000
[exp]
3.46 0.8904
AT1G52600 Peptidase S24/S26A/S26B/S26C f... Potri.018G005800
[exp]
4.89 0.8502
AT5G06410 DNAJ heat shock N-terminal dom... Potri.006G200900
[exp]
5.74 0.8509
AT1G52343 unknown protein Potri.003G055200
[exp]
6.48 0.8696
AT2G27490 ATCOAE dephospho-CoA kinase family (.... Potri.008G053601
[exp]
6.70 0.8767
AT5G63480 unknown protein Potri.012G099200
[exp]
7.07 0.8515
AT1G77850 ARF ARF17 auxin response factor 17 (.1) Potri.002G089900
[exp]
8.48 0.8567
AT1G08710 F-box family protein (.1.2) Potri.013G067600
[exp]
10.95 0.8390

Potri.014G197700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.