Plant FIBer expression Database

Potri.014G198000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G12740 525 / 0 HhH-GPD base excision DNA repair family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10043074
[exp]
558 / 0 AT4G12740 468 / 7e-161 HhH-GPD base excision DNA repair family protein (.1)
Lus10001182
[exp]
556 / 0 AT4G12740 464 / 2e-158 HhH-GPD base excision DNA repair family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0198 HHH PF00730 HhH-GPD HhH-GPD superfamily base excision DNA repair protein
CL0261 NUDIX PF14815 NUDIX_4 NUDIX domain
Representative CDS sequence
>Potri.014G198000.1 pacid=42762957 polypeptide=Potri.014G198000.1.p locus=Potri.014G198000 ID=Potri.014G198000.1.v4.1 annot-version=v4.1
ATGTCTGGCAACACAAACCCAAAAGTGAGTGGGTGGCGCGGGGTGGGTCGATTCGAATTCTCGAAAGCACCTTCTTCAAGGAGCAGCAGGCTCATACAAA
AAGTGAACAGAAAACCCCACCTCACAACAGCAACAACAATGGATGAGGAGGGTATCGAGAAGCCAAGTAAGAGGAAAAGAAATGCAGCCATAGCCAAACC
AAAGGAGCAGCGTCAACATTCATCTAAAAAACAAGTAGTAGCTGACATTGAAGACCTGTTCTCTGACAAAGAAACCCAGAAAATCAGAGCCTCATTGCTT
GAGTGGTACGACCACAACCAAAGAGACCTTCCTTGGAGAAGAATAACACAAACAAAAGAAACCCCATTTAAAGAAGAAGAAGAAGAAGAAGAAGAAGAAG
AAGAAAGGAGGGCGTATGGGGTGTGGGTATCTGAAGTTATGTTGCAGCAGACCAGAGTTCAGACTGTGATTGATTACTATAATCGATGGATGTTAAAATG
GCCCACTCTACACCATCTGGCCCAGGCTTCTCTTGAGGAAGTGAATGAGATGTGGGCTGGTTTAGGGTATTATAGGAGAGCACGGTTTCTGTTGGAGGGA
GCCAAGATGATTGTAGCTGGCGGAGATGGATTTCCTAAAATTGTTTCTTCCCTACGGAAGGTTCCCGGAATAGGAGACTATACAGCTGGTGCAATTGCCT
CAATAGCATTCAAAGAAGTGGTGCCAGTGGTTGATGGGAATGTAATAAGGGTACTTGCTAGGTTGAAGGCAATTTCAGCTAATCCAAAAGACAAGGTGAC
AGTCAAGAAATTTTGGAAGCTAGCAGCTCAACTAGTTGATCCTCATCGTCCTGGGGATTTCAATCAGTCTCTGATGGAACTTGGTGCAACCTTATGCACT
CCAGTGAACCCAAGCTGTTCTTCATGTCCTGTTTCAGGCCAATGCCGTGCACTTACAATCTCCAAGCTGGATAAGTTAGTTCTGATTACAGATTATCCTG
CTAAGAGCATAAAGTTAAAGCAAAGACATGAATTTTCTGCTGTTTGTGCTGTGGAGATAACTGGAAGGCAAGATCTAATTGAGGGAGACCAATCCAGTAG
TGTATTTCTTCTCGTAAAGAGGCCAGATGAAGGTTTGCTTGCTGGACTGTGGGAGTTCCCATCTGTCATGCTGGGAAAAGAAGCCGACATGACCAGAAGG
AGAAAGGAAATGAATCGCTTTCTGAAAAAATCATTTAGACTTGACCCACAGAAGACCTGTAGCGTACTTCTGAGGGAAGATATTGGAGAATTTATTCACA
TTTTCACTCACATTCGTCTTAAGGTTTATGTAGAACTGTTGATAGTACATCTTAAAGGTGACATGAGTGACTTGTTTAGTAAGCAAAGCAGAGAAAATAT
GACCTGGAAATGTGTGGATCGTGAGGCCCTTTCAAGCTTGGGATTAACATCTGGAGTGAGAAAGGCCTGCACTATGGTTCAAAAGTTTAAGCAGAAAAGT
TTGTCCACTGTTTCTGCTGCAGCAAGAAAAAGAACCAACTCAAAGAAACCTGGATCATCCTGA
AA sequence
>Potri.014G198000.1 pacid=42762957 polypeptide=Potri.014G198000.1.p locus=Potri.014G198000 ID=Potri.014G198000.1.v4.1 annot-version=v4.1
MSGNTNPKVSGWRGVGRFEFSKAPSSRSSRLIQKVNRKPHLTTATTMDEEGIEKPSKRKRNAAIAKPKEQRQHSSKKQVVADIEDLFSDKETQKIRASLL
EWYDHNQRDLPWRRITQTKETPFKEEEEEEEEEEERRAYGVWVSEVMLQQTRVQTVIDYYNRWMLKWPTLHHLAQASLEEVNEMWAGLGYYRRARFLLEG
AKMIVAGGDGFPKIVSSLRKVPGIGDYTAGAIASIAFKEVVPVVDGNVIRVLARLKAISANPKDKVTVKKFWKLAAQLVDPHRPGDFNQSLMELGATLCT
PVNPSCSSCPVSGQCRALTISKLDKLVLITDYPAKSIKLKQRHEFSAVCAVEITGRQDLIEGDQSSSVFLLVKRPDEGLLAGLWEFPSVMLGKEADMTRR
RKEMNRFLKKSFRLDPQKTCSVLLREDIGEFIHIFTHIRLKVYVELLIVHLKGDMSDLFSKQSRENMTWKCVDREALSSLGLTSGVRKACTMVQKFKQKS
LSTVSAAARKRTNSKKPGSS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G12740 HhH-GPD base excision DNA repa... Potri.014G198000
[exp]
0 1
AT1G06130 GLX2-4 glyoxalase 2-4 (.1.2) Potri.017G026500
[exp]
10.58 0.6581 GLX2.3
AT5G58590 RANBP1 RAN binding protein 1 (.1) Potri.016G119800
[exp]
13.85 0.6967
AT1G31320 AS2 LBD4 LOB domain-containing protein ... Potri.003G149000
[exp]
21.63 0.6652 LBD3.1
AT5G38690 Zinc-finger domain of monoamin... Potri.018G024400
[exp]
27.00 0.6932
AT5G67100 ICU2 INCURVATA2, DNA-directed DNA p... Potri.007G045300
[exp]
27.11 0.6696
AT5G58630 unknown protein Potri.009G046900
[exp]
27.20 0.6770
AT1G60890 Phosphatidylinositol-4-phospha... Potri.001G211200
[exp]
36.08 0.6291
AT3G06130 Heavy metal transport/detoxifi... Potri.013G025300
[exp]
51.98 0.6426
AT3G51080 GATA GATA6 GATA transcription factor 6 (.... Potri.007G016600
[exp]
61.84 0.6208
AT5G06680 ATSPC98, SPC98,... ARABIDOPSIS THALIANA GAMMA TUB... Potri.016G059900
[exp]
67.03 0.5147 TUBGCP6,Pt-SPC98.1

Potri.014G198000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.