Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48330 533 / 0 RUG2 RCC1/UVR8/GEF-like 2, Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2) AT5G63860 130 / 3e-33 UVR8 UVB-RESISTANCE 8, Regulator of chromosome condensation (RCC1) family protein (.1) AT3G02510 117 / 9e-29 Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2) AT5G16040 114 / 8e-28 Regulator of chromosome condensation (RCC1) family protein (.1) AT5G60870 110 / 4e-26 RUG3 RCC1/UVR8/GEF-like 3, Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2), Regulator of chromosome condensation (RCC1) family protein (.3) AT1G27060 102 / 8e-24 Regulator of chromosome condensation (RCC1) family protein (.1) AT5G12350 102 / 4e-23 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT5G19420 102 / 5e-23 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) AT1G76950 92 / 2e-19 PRAF1 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT3G03790 91 / 5e-19 ankyrin repeat family protein / regulator of chromosome condensation (RCC1) family protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G100200 [exp] 123 / 1e-30 AT5G63860 738 / 0.0 UVB-RESISTANCE 8, Regulator of chromosome condensation (RCC1) family protein (.1) Potri.017G113200 [exp] 113 / 1e-27 AT5G16040 676 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1) Potri.004G101800 [exp] 113 / 2e-27 AT5G16040 665 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1) Potri.016G101700 [exp] 107 / 7e-25 AT3G53830 547 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1) Potri.008G167500 [exp] 104 / 1e-23 AT4G14368 1266 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1) Potri.001G026900 [exp] 103 / 2e-23 AT5G19420 1281 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.001G276900 [exp] 96 / 7e-21 AT5G19420 1483 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.017G139600 [exp] 96 / 9e-21 AT1G65920 937 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Potri.009G071800 [exp] 96 / 1e-20 AT5G19420 1610 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012298 [exp] 594 / 0 AT5G48330 525 / 0.0 RCC1/UVR8/GEF-like 2, Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2) Lus10016075 [exp] 501 / 6e-174 AT5G48330 447 / 1e-152 RCC1/UVR8/GEF-like 2, Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2) Lus10039618 [exp] 127 / 3e-32 AT5G63860 715 / 0.0 UVB-RESISTANCE 8, Regulator of chromosome condensation (RCC1) family protein (.1) Lus10029536 [exp] 109 / 1e-25 AT5G63860 642 / 0.0 UVB-RESISTANCE 8, Regulator of chromosome condensation (RCC1) family protein (.1) Lus10039525 [exp] 110 / 2e-25 AT5G19420 1245 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Lus10033543 [exp] 103 / 4e-24 AT3G02510 648 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2) Lus10035957 [exp] 103 / 5e-24 AT5G08710 504 / 1e-178 RCC1/UVR8/GEF-like 1, Regulator of chromosome condensation (RCC1) family protein (.1) Lus10024157 [exp] 104 / 2e-23 AT5G19420 1279 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Lus10017581 [exp] 100 / 5e-23 AT3G02510 636 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2) Lus10016335 [exp] 101 / 1e-22 AT5G19420 971 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00415 [poplar] [flax] RCC1 Regulator of chromosome condensation (RCC1) repeat CL0186 [poplar] [flax] Beta_propeller PF13540 [poplar] [flax] RCC1_2 Regulator of chromosome condensation (RCC1) repeat
Representative CDS sequence Show only first row Show all	>Potri.014G198300.1 pacid=42763592 polypeptide=Potri.014G198300.1.p locus=Potri.014G198300 ID=Potri.014G198300.1.v4.1 annot-version=v4.1 ATGCTTCGAATTCGAAGAGTGTTAAAGGAGAAGAAACTCCTGAATCTAATTGCAAGAAGCTCAAGAACAAGATGGATGAGCAGCGGTACAGAAGTAATGA GCTTTGGGGATGGGAGCCATGGAGCTCTGGGACTGCCCACTTCTCTGATAGGCCACGGTATGGATGCTTATGAGCCCACCCCCGTTACTGGGCTTCCCTC TGATATCACATCAGTCAGTGCGGGACACTACCACTCACTTGCCGTCACTTCTCATGGCCAGCTCTGGGCATGGGGTCGCAACCACGAAGTCCAGCTCGGC CGCGGCCTCCTTTCTCCCAGAGATACATGGAATGAACCGAAGAGAGTAGAAGGGTTGGACCAAGTGCAAGTCACTGCTGCATTTGCATCTGGTGTTGTCT CTGCAGCGATCGGAGATGATGGGTCATTGTGGGTTTGGGGCAAGTCTAAGCGTGGACAGCTTGGTCTCGGCAAAGGCATAACAGAAGCTTCGGTGCCTTC TAAAGTTGAAGCACTTGAAGGTCAAAAGATAGCTAAGGTATCATTTGGTTGGGGGCACACTCTCGCGCAGACTGTGGAAGGAAAATTGTTTGGCTGGGGT TATCTGGCTGATGGTAGGTTAGGAAAGATGGGTGGTCTTGTTGAGGCATCTCCACTTGATTCCAGTATGAATGTAGTTAAACATGAAGTAATCACACAAT CAACAGTGGAAGTTGCTGAAAGACTGGTTTTAGAAGGAATGGAGAAAGAAAAGGACATGCCGATAGTTTGGGATCCCTGTTCAGTAGAAGAATTAAAAGG AGTTGAAGTTGTAGACATTGCATGCGGGCTTGATCATTCTTTGGTTCTTTGCCGTGATGGCACTCTATTAAGCTCGGGGAGCAATGTATATGGACAGCTG GGGAGGGCAAACCATGACATGGGATTTTTTCCGGTCGATATAAGCTTCCCGGCCTTGGCTATTGCATCAGGCCTCGGCCATTCTCTGGCAATTTGCCAAG CTAAATCACCAGAGGGAAAAGGAGATGCCACAAGTATAGTTTCATGGGGATGGAACCAGAGTTCCCAGCTTGGAAGGCCAGGGCCAGAGAATGTCCCAAT GGAGGTTGAGGGATTGGCAGGGGAAACTGCTATCTTAGTGTCTGGAGGTCGAGTACATTCCATCGCTGTCACATCTAAAGGAGAGGTGTGGGTTTGGGGC TGTGGTAGGAACGGCAGGCTTGGGCTAGGGAGCTCGTGTGATGAAGCTGAACCAATTATGCTCGACAGTCTAGAAGGTTGTGAAGTTTTGCAAGCCGTGT CAGGCTTTGATCATAACCTAATCTTGATAGCTCAGTGA
AA sequence Show only first row Show all	>Potri.014G198300.1 pacid=42763592 polypeptide=Potri.014G198300.1.p locus=Potri.014G198300 ID=Potri.014G198300.1.v4.1 annot-version=v4.1 MLRIRRVLKEKKLLNLIARSSRTRWMSSGTEVMSFGDGSHGALGLPTSLIGHGMDAYEPTPVTGLPSDITSVSAGHYHSLAVTSHGQLWAWGRNHEVQLG RGLLSPRDTWNEPKRVEGLDQVQVTAAFASGVVSAAIGDDGSLWVWGKSKRGQLGLGKGITEASVPSKVEALEGQKIAKVSFGWGHTLAQTVEGKLFGWG YLADGRLGKMGGLVEASPLDSSMNVVKHEVITQSTVEVAERLVLEGMEKEKDMPIVWDPCSVEELKGVEVVDIACGLDHSLVLCRDGTLLSSGSNVYGQL GRANHDMGFFPVDISFPALAIASGLGHSLAICQAKSPEGKGDATSIVSWGWNQSSQLGRPGPENVPMEVEGLAGETAILVSGGRVHSIAVTSKGEVWVWG CGRNGRLGLGSSCDEAEPIMLDSLEGCEVLQAVSGFDHNLILIAQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G48330		RUG2	RCC1/UVR8/GEF-like 2, Regulato...		Potri.014G198300 [exp]	0	1
AT4G30700			Pentatricopeptide repeat (PPR)...		Potri.016G077700 [exp]	3.16	0.8410
AT4G15010			Mitochondrial substrate carrie...		Potri.001G222400 [exp]	3.46	0.8378
AT3G11220		ELO1	ELONGATA 1, Paxneb protein-rel...		Potri.010G189500 [exp]	6.00	0.8050
AT3G09040			Pentatricopeptide repeat (PPR)...		Potri.005G187800 [exp]	6.00	0.8188
AT1G78590		NADK3, ATNADK-3	ARABIDOPSIS THALIANA NADH KINA...		Potri.011G104400 [exp]	6.48	0.8177
AT4G00620		EMB3127	EMBRYO DEFECTIVE 3127, Amino a...		Potri.002G157100 [exp]	8.48	0.8140
AT3G07750			3'-5'-exoribonuclease family p...		Potri.014G166200 [exp]	9.53	0.7887
AT3G21740		APO4	ACCUMULATION OF PHOTOSYSTEM ON...		Potri.017G037200 [exp]	10.24	0.8178
AT5G64580		EMB3144	EMBRYO DEFECTIVE 3144, AAA-typ...		Potri.005G059700 [exp]	11.83	0.8173
AT1G56570		PGN	PENTATRICOPEPTIDE REPEAT PROTE...		Potri.013G006700 [exp]	15.00	0.7855

Compare expression of checked genes

Potri.014G198300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.