Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04635 204 / 1e-68 EMB1687 EMBRYO DEFECTIVE 1687, ribonuclease P family protein / Rpp14 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G001200 [exp] 306 / 4e-109 AT1G04635 215 / 6e-73 EMBRYO DEFECTIVE 1687, ribonuclease P family protein / Rpp14 family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005287 [exp] 235 / 1e-80 AT1G04635 203 / 3e-68 EMBRYO DEFECTIVE 1687, ribonuclease P family protein / Rpp14 family protein (.1) Lus10032961 [exp] 224 / 2e-76 AT1G04635 194 / 1e-64 EMBRYO DEFECTIVE 1687, ribonuclease P family protein / Rpp14 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01900 [poplar] [flax] RNase_P_Rpp14 Rpp14/Pop5 family
Representative CDS sequence Show only first row Show all	>Potri.015G001000.1 pacid=42776145 polypeptide=Potri.015G001000.1.p locus=Potri.015G001000 ID=Potri.015G001000.1.v4.1 annot-version=v4.1 ATGGTGGGATTTAAGAATAGGTACATGGTAATGGAAGTTTTCTTGGATCCAAATCGAGATCTTGGAGTAGATGATCCTATTATAATAACACAATATAATG TTTCAAAAGCGATTAAAGACAGTATTCTTGTAAACTTTAGGGAGTGTGGTTTGGCTTCATCCCCTGGATCGTTCCAAGTCAAGTATGTGAATCCGATTAC CAAGCTATATATCATCAGAACCTCACGAGAGGAGTACCAAAAGGTCTGGTCTGCAATTACCATGGTTAGGCGCGTTGGTAACTGCCCAGTTCTATTCAAC CTGCTAGATCTAAGTGGAAGTATCAAGGCCTGTAAAGTTGCTGCCTTGAAGTGTGATGAAATGAAATTTGAGCACTACAAACTTGCAGCTGGAGCACCTC TCTCTCCTGATGTTAATCAGCACATGCAAAACTGTCTTGAAAAGATCAACATTTTGGAGCACTGA
AA sequence Show only first row Show all	>Potri.015G001000.1 pacid=42776145 polypeptide=Potri.015G001000.1.p locus=Potri.015G001000 ID=Potri.015G001000.1.v4.1 annot-version=v4.1 MVGFKNRYMVMEVFLDPNRDLGVDDPIIITQYNVSKAIKDSILVNFRECGLASSPGSFQVKYVNPITKLYIIRTSREEYQKVWSAITMVRRVGNCPVLFN LLDLSGSIKACKVAALKCDEMKFEHYKLAAGAPLSPDVNQHMQNCLEKINILEH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G04635		EMB1687	EMBRYO DEFECTIVE 1687, ribonuc...		Potri.015G001000 [exp]	0	1
AT3G50410	DOF	OBP1, AtDof3. 4	OBF binding protein 1 (.1)		Potri.007G036400 [exp]	3.16	0.8385	Pt-OBP1.1
AT3G48880			RNI-like superfamily protein (...		Potri.016G019500 [exp]	5.65	0.8096
AT1G23220			Dynein light chain type 1 fami...		Potri.010G108700 [exp]	6.63	0.8685
AT2G38430			unknown protein		Potri.019G030200 [exp]	6.63	0.8192
AT5G65260			RNA-binding (RRM/RBD/RNP motif...		Potri.017G051600 [exp]	8.30	0.7937
AT3G07880		SCN1	SUPERCENTIPEDE1, Immunoglobuli...		Potri.002G259200 [exp]	10.39	0.8380
AT4G08980		FBW2	F-BOX WITH WD-40 2 (.1.2.3.4.5...		Potri.002G099100 [exp]	10.39	0.8210
AT3G23805		RALFL24	ralf-like 24 (.1)		Potri.001G320700 [exp]	10.95	0.7954
AT1G74520		ATHVA22A	HVA22 homologue A (.1)		Potri.015G062800 [exp]	13.85	0.8316
AT1G73177		APC13, BNS	anaphase-promoting complex 13,...		Potri.004G058400 [exp]	14.83	0.8205

Compare expression of checked genes

Potri.015G001000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.