Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24600 322 / 3e-112 Protein of unknown function, DUF599 (.1.2) AT3G18215 245 / 8e-82 Protein of unknown function, DUF599 (.1) AT4G31330 169 / 3e-52 Protein of unknown function, DUF599 (.1) AT5G10580 151 / 4e-45 Protein of unknown function, DUF599 (.1.2) AT5G24790 144 / 3e-42 Protein of unknown function, DUF599 (.1) AT5G46060 139 / 3e-40 Protein of unknown function, DUF599 (.1) AT5G43180 92 / 1e-22 Protein of unknown function, DUF599 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G001500 [exp] 478 / 1e-173 AT5G24600 316 / 7e-110 Protein of unknown function, DUF599 (.1.2) Potri.006G278000 [exp] 167 / 2e-51 AT4G31330 371 / 1e-131 Protein of unknown function, DUF599 (.1) Potri.001G372900 [exp] 153 / 9e-46 AT5G46060 145 / 6e-43 Protein of unknown function, DUF599 (.1) Potri.011G059400 [exp] 130 / 7e-37 AT5G46060 151 / 3e-45 Protein of unknown function, DUF599 (.1) Potri.016G137800 [exp] 105 / 2e-27 AT5G43180 174 / 5e-54 Protein of unknown function, DUF599 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015590 [exp] 290 / 4e-99 AT5G24600 291 / 2e-99 Protein of unknown function, DUF599 (.1.2) Lus10032916 [exp] 288 / 1e-98 AT5G24600 292 / 6e-100 Protein of unknown function, DUF599 (.1.2) Lus10013947 [exp] 288 / 4e-98 AT5G24600 272 / 6e-92 Protein of unknown function, DUF599 (.1.2) Lus10005272 [exp] 286 / 3e-97 AT5G24600 267 / 8e-90 Protein of unknown function, DUF599 (.1.2) Lus10009010 [exp] 259 / 1e-87 AT3G18215 317 / 2e-110 Protein of unknown function, DUF599 (.1) Lus10009640 [exp] 171 / 3e-53 AT3G18215 224 / 4e-74 Protein of unknown function, DUF599 (.1) Lus10026976 [exp] 161 / 6e-49 AT4G31330 347 / 2e-122 Protein of unknown function, DUF599 (.1) Lus10005266 [exp] 141 / 4e-41 AT5G46060 207 / 4e-67 Protein of unknown function, DUF599 (.1) Lus10013943 [exp] 139 / 1e-40 AT5G46060 212 / 5e-69 Protein of unknown function, DUF599 (.1) Lus10020172 [exp] 118 / 7e-33 AT4G31330 271 / 3e-93 Protein of unknown function, DUF599 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04654 [poplar] [flax] DUF599 Protein of unknown function, DUF599
Representative CDS sequence Show only first row Show all	>Potri.015G001300.1 pacid=42775875 polypeptide=Potri.015G001300.1.p locus=Potri.015G001300 ID=Potri.015G001300.1.v4.1 annot-version=v4.1 ATGGGGAGAGCAATTCTCGATTACACACTGGTTCCTTTGGGACTTGTTACGATGGTGGCATACCACATATGGCTTCTTTATCGAATCATGAAGCACCCCA CCAAGACTGTCATTGGCATCAATGCTATCAATCGCCGCTTCTGGGTTCGAGCCATGATGGAGGACGTGTCCAAGAATGGAGTTCTCGCAGTGCAGACGCT GAGAAACAATATAATGGCATCCACCGTCTTGGCATCAACAGCCATCATGCTCAGCTCCCTTATTGCCGTTCTCATGACAAGCGGCAGCGGGGACAAGTCA GCCAGGAATTTTGTGTTTGGGGACAGGAGTGAGTTAGGGTTGTCCATCAAGTTCTTCTCAATACTGGTGTGCTTCCTGGTGGCATTCTTGTTGAATGTGC AGTCAATCAGGTACTACAGCCATGCAAGTATCCTCATCAACGTGCCCTTCAAGAAGATGTGCCCTAATCATCGCCATCAGCATCTCAGCACCGAGTATGT GGCTAGGTCCGTGAACAGGGGTAGCTATTTCTGGTCATTAGGGCTGCGTGCCTTTTATTTCTCGTTCCCACTCTTTTTGTGGATCTTTGGGCCCATTCCA ATGTTTTTGTCATGCGTTTTCCTGGTTTCCATGCTCTATTTCCTGGATGTCACCTTGGGAACTGGGTGGGCTGATGGTGACGAGGACGACGATGTCGGCC ACAAGAACGTGGGGTCCCAAAGTCAAGTTTGA
AA sequence Show only first row Show all	>Potri.015G001300.1 pacid=42775875 polypeptide=Potri.015G001300.1.p locus=Potri.015G001300 ID=Potri.015G001300.1.v4.1 annot-version=v4.1 MGRAILDYTLVPLGLVTMVAYHIWLLYRIMKHPTKTVIGINAINRRFWVRAMMEDVSKNGVLAVQTLRNNIMASTVLASTAIMLSSLIAVLMTSGSGDKS ARNFVFGDRSELGLSIKFFSILVCFLVAFLLNVQSIRYYSHASILINVPFKKMCPNHRHQHLSTEYVARSVNRGSYFWSLGLRAFYFSFPLFLWIFGPIP MFLSCVFLVSMLYFLDVTLGTGWADGDEDDDVGHKNVGSQSQV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G24600			Protein of unknown function, D...		Potri.015G001300 [exp]	0	1
AT5G24600			Protein of unknown function, D...		Potri.015G001500 [exp]	1.00	0.8865
AT4G29950			Ypt/Rab-GAP domain of gyp1p su...		Potri.018G143100 [exp]	1.41	0.8298
AT3G50700	C2H2ZnF	ATIDD2	indeterminate(ID)-domain 2 (.1...		Potri.014G180600 [exp]	3.87	0.8109
AT4G25700		BCH1, B1, CHY1,...	BETA CAROTENOID HYDROXYLASE 1,...		Potri.017G145700 [exp]	6.63	0.8120
AT3G43740			Leucine-rich repeat (LRR) fami...		Potri.009G090700 [exp]	7.93	0.7869
AT5G58350		ZIK2, WNK4	with no lysine (K) kinase 4 (....		Potri.013G155100 [exp]	12.00	0.7698
AT5G40780		LHT1, LTH1	lysine histidine transporter 1...		Potri.001G335300 [exp]	15.39	0.8135	Pt-LHT1.2
AT5G04740		ACR12	ACT domain repeats 12, ACT dom...		Potri.008G020700 [exp]	16.91	0.7384
AT4G25433			peptidoglycan-binding LysM dom...		Potri.014G077900 [exp]	18.00	0.7226
AT4G21200		ATGA2OX8	ARABIDOPSIS THALIANA GIBBERELL...		Potri.010G096800 [exp]	18.22	0.6846

Compare expression of checked genes

Potri.015G001300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.