Plant FIBer expression Database

Potri.015G001700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.012G010900
[exp]
109 / 2e-31 ND /
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.015G001700.1 pacid=42776037 polypeptide=Potri.015G001700.1.p locus=Potri.015G001700 ID=Potri.015G001700.1.v4.1 annot-version=v4.1
ATGGGAGGCTGTGCGGGTAAATTCAAGGGCTCTGATGATTTGGCTCCAGAGCCCCTCCCAAGTGACGCTCCTGTCAACCCTGACCAGGCTGAGGGCGAGA
CCGTTGCTAAGGAGAAGGAGGTAGGTGAGATCAAGACTGAAGCACCTTTGGTAGATGTCTCCGAGCAAAAACACGAGGGTGAGAAACCCGCCGAGCCAGA
GACTCCTGCTGCCGAGCCCGAGAAGAAAGATGAAACCCCTGTTGCCGAGCCCGAGAAGAAAGATGAAACCCCTGCTGCCAAATCAGAGGACAAGGTTGAG
GCCTCCGCTGCACCTGAGAAGAAAGAGGAAACCCCTCCTGCAAAAGAGACTGAGAAGAAGGAATCAGATGTTGCTCCTACCAAAGAAGCAAACAAAGAGA
CTCCTCCGGTTACCGTCTGA
AA sequence
>Potri.015G001700.1 pacid=42776037 polypeptide=Potri.015G001700.1.p locus=Potri.015G001700 ID=Potri.015G001700.1.v4.1 annot-version=v4.1
MGGCAGKFKGSDDLAPEPLPSDAPVNPDQAEGETVAKEKEVGEIKTEAPLVDVSEQKHEGEKPAEPETPAAEPEKKDETPVAEPEKKDETPAAKSEDKVE
ASAAPEKKEETPPAKETEKKESDVAPTKEANKETPPVTV

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.015G001700
[exp]
0 1
AT1G13680 PLC-like phosphodiesterases su... Potri.004G117500
[exp]
1.73 0.9639
AT5G36000 unknown protein Potri.014G098300
[exp]
2.00 0.9490
AT5G14230 unknown protein Potri.011G151300
[exp]
3.00 0.9386
AT1G67856 RING/U-box superfamily protein... Potri.010G047100
[exp]
3.60 0.9007
AT1G64660 ATMGL methionine gamma-lyase (.1) Potri.003G146600
[exp]
6.70 0.9267
AT2G20430 RIC6 ROP-interactive CRIB motif-con... Potri.002G035500
[exp]
8.77 0.9238
AT2G13570 CCAAT NF-YB7 "nuclear factor Y, subunit B7"... Potri.007G103901
[exp]
9.79 0.9258
AT5G07500 C3HZnF PEI1 Zinc finger C-x8-C-x5-C-x3-H t... Potri.001G080100
[exp]
10.24 0.8861
AT5G05820 Nucleotide-sugar transporter f... Potri.009G040800
[exp]
11.31 0.9215
AT2G16230 O-Glycosyl hydrolases family 1... Potri.014G184900
[exp]
13.07 0.9119

Potri.015G001700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.