Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27585 499 / 1e-176 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) AT5G54100 476 / 1e-167 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) AT3G01290 74 / 1e-14 AtHIR2 hypersensitive induced reaction 2, SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) AT5G51570 59 / 1e-09 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) AT5G62740 58 / 4e-09 AtHIR4, ATHIR1 hypersensitive induced reaction 4, HYPERSENSITIVE-INDUCED RESPONSE PROTEIN 1, SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) AT1G69840 51 / 5e-07 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1.2.3.4.5.6.7)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G005500 [exp] 684 / 0 AT4G27585 463 / 3e-162 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Potri.012G009800 [exp] 530 / 0 AT4G27585 382 / 3e-130 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Potri.012G011345 [exp] 415 / 1e-144 AT4G27585 268 / 2e-87 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Potri.012G010001 [exp] 393 / 1e-136 AT4G27585 245 / 6e-79 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Potri.017G078000 [exp] 61 / 5e-10 AT5G62740 518 / 0.0 hypersensitive induced reaction 4, HYPERSENSITIVE-INDUCED RESPONSE PROTEIN 1, SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Potri.017G078100 [exp] 57 / 5e-09 AT5G62740 488 / 3e-176 hypersensitive induced reaction 4, HYPERSENSITIVE-INDUCED RESPONSE PROTEIN 1, SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Potri.012G129000 [exp] 56 / 2e-08 AT5G51570 480 / 4e-173 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Potri.015G130600 [exp] 53 / 1e-07 AT5G51570 510 / 0.0 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032909 [exp] 484 / 2e-170 AT4G27585 498 / 4e-176 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Lus10015597 [exp] 360 / 1e-120 AT4G27585 383 / 7e-130 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Lus10015356 [exp] 59 / 2e-09 AT5G62740 506 / 0.0 hypersensitive induced reaction 4, HYPERSENSITIVE-INDUCED RESPONSE PROTEIN 1, SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Lus10033099 [exp] 57 / 5e-09 AT5G62740 533 / 0.0 hypersensitive induced reaction 4, HYPERSENSITIVE-INDUCED RESPONSE PROTEIN 1, SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Lus10015032 [exp] 57 / 6e-09 AT5G51570 532 / 0.0 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Lus10007268 [exp] 56 / 1e-08 AT5G62740 510 / 0.0 hypersensitive induced reaction 4, HYPERSENSITIVE-INDUCED RESPONSE PROTEIN 1, SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Lus10004268 [exp] 55 / 3e-08 AT5G62740 535 / 0.0 hypersensitive induced reaction 4, HYPERSENSITIVE-INDUCED RESPONSE PROTEIN 1, SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Lus10038907 [exp] 55 / 3e-08 AT5G51570 529 / 0.0 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Lus10036715 [exp] 52 / 4e-07 AT1G69840 516 / 0.0 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1.2.3.4.5.6.7) Lus10037213 [exp] 52 / 4e-07 AT1G69840 514 / 0.0 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1.2.3.4.5.6.7)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0433 [poplar] [flax] SPFH PF01145 [poplar] [flax] Band_7 SPFH domain / Band 7 family CL0433 [poplar] [flax] PF16200 [poplar] [flax] Band_7_C C-terminal region of band_7
Representative CDS sequence Show only first row Show all	>Potri.015G001900.1 pacid=42775420 polypeptide=Potri.015G001900.1.p locus=Potri.015G001900 ID=Potri.015G001900.1.v4.1 annot-version=v4.1 ATGTGGAGAAGAAGTAGCAGCAGTAGTATTTCTTTGATCAACCACGGCGTTAGAGCCTTCCACCACCACCTCTCCTCCTTGTCGGCTACCACCACTCCCA GAACCCTCCTTTCCTCCTCTAATTCTCCCTTGTTTCACCCTCCGTCTTCTCACTTAGCCCATAACAACCGCCTCTCCGTCCGCTTCCTCCGCACCGGCCG CGACCCCTTCACCAGTTATGAGATAACGGCGCCTGTGAATTGGGGGATACGGATTGTGCCGGAGAAGAAGGCGTTTGTGATAGAGAGATTTGGAAAGTAT TTGAAGACGCTGCCATCTGGGATTCATTTCTTGATTCCTTTTGTGGACCGAATTGCTTATGTTCATTCTTTGAAGGAAGAGGCTATTCAGATCCCTGATC AGTCTGCTATTACCAAAGACAATGTCAGCATTCTCATCGATGGCGTCCTCTATGTCAAGATTGTGGACCCTAAACTTGCCTCTTATGGTGTTGAGAATCC CATCTATGCTGTTGTTCAACTTGCCCAGACCACTATGCGTAGTGAGCTTGGTAAGATTACTCTTGACAAGACCTTTGAAGAAAGAGACACTCTCAATGAA AAGATTGTGGAGTCCATTAATGTGGCTGCAACAGACTGGGGTCTCCGGTGCCTTCGCTATGAAATAAGGGATATATCTCCTCCACGTGGAGTAAAGCAAG CTATGGAGATGCAAGCCGAAGCAGAACGTAGAAAGAGAGCTCAAATTCTCGACTCCGAAGGAAAGAGACAGGCCGACATTAATATTGCTGATGGTCACAA GAGTGCTGAGATCTTGGCATCACAAGGAGAGAAACAAGCTATCATTAACAAAGCACAAGGTGAAGCTGAAGCCATCTTTGCTAAAGCACAAGCAACAGCC AAAGGAATTGCCATTGTGTCAGAGCATATTAAAAAGAGTGGGGGAGTTGAGGCAGCTAGTTTGAAAATTGCTGAGCAATATGTGGGAGCTTTTGGTAACA TTGCCAAAGAGGGAACAACAATACTGCTTCCCAGCGCTACTGGCAATCCTGCCAATATTATGGCTCAAGCTTTCACTATGTACAAGAGCCTGCTTGGTAA TGTTTCCAATGGTGGTCGTAATGGGTCTTCTTCGTTAGCAGAAACCACATCTGCTGAATCCGTGGATTCTACCACAGTTTTAGAGGACAATGCTTCCTCC TTTGCAATCAAATCCACGGGTGAGAGTGCTAGAGATAATGGCGAACCAGGATTTTCACTTCAGAGCCGCAAAAAGGGGAAAGCTGAATAG
AA sequence Show only first row Show all	>Potri.015G001900.1 pacid=42775420 polypeptide=Potri.015G001900.1.p locus=Potri.015G001900 ID=Potri.015G001900.1.v4.1 annot-version=v4.1 MWRRSSSSSISLINHGVRAFHHHLSSLSATTTPRTLLSSSNSPLFHPPSSHLAHNNRLSVRFLRTGRDPFTSYEITAPVNWGIRIVPEKKAFVIERFGKY LKTLPSGIHFLIPFVDRIAYVHSLKEEAIQIPDQSAITKDNVSILIDGVLYVKIVDPKLASYGVENPIYAVVQLAQTTMRSELGKITLDKTFEERDTLNE KIVESINVAATDWGLRCLRYEIRDISPPRGVKQAMEMQAEAERRKRAQILDSEGKRQADINIADGHKSAEILASQGEKQAIINKAQGEAEAIFAKAQATA KGIAIVSEHIKKSGGVEAASLKIAEQYVGAFGNIAKEGTTILLPSATGNPANIMAQAFTMYKSLLGNVSNGGRNGSSSLAETTSAESVDSTTVLEDNASS FAIKSTGESARDNGEPGFSLQSRKKGKAE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G27585			SPFH/Band 7/PHB domain-contain...		Potri.015G001900 [exp]	0	1
AT5G10010			unknown protein		Potri.007G082000 [exp]	3.31	0.7433
AT1G07210			Ribosomal protein S18 (.1)		Potri.006G170500 [exp]	3.46	0.7841
AT5G02050			Mitochondrial glycoprotein fam...		Potri.006G090700 [exp]	4.12	0.8179	Pt-SDH4.3
AT4G08960			phosphotyrosyl phosphatase act...		Potri.005G162900 [exp]	5.65	0.7288
AT1G09760		U2A'	U2 small nuclear ribonucleopro...		Potri.003G158800 [exp]	9.79	0.7635
AT3G10530			Transducin/WD40 repeat-like su...		Potri.010G232500 [exp]	10.00	0.7655
AT4G34910			P-loop containing nucleoside t...		Potri.007G021800 [exp]	10.00	0.7749
AT2G39795			Mitochondrial glycoprotein fam...		Potri.010G198600 [exp]	11.09	0.7790
AT3G02650			Tetratricopeptide repeat (TPR)...		Potri.001G361500 [exp]	11.53	0.7635
AT2G34570		MEE21	maternal effect embryo arrest ...		Potri.004G197200 [exp]	14.83	0.7507

Compare expression of checked genes

Potri.015G001900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.