Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G04230 59 / 9e-10 FBD, F-box and Leucine Rich Repeat domains containing protein (.1) AT5G56690 56 / 1e-08 FBD, F-box and Leucine Rich Repeat domains containing protein (.1) AT4G10400 54 / 4e-08 F-box/RNI-like/FBD-like domains-containing protein (.1.2) AT1G32020 52 / 4e-08 F-box family protein (.1) AT5G38570 53 / 8e-08 F-box/RNI-like superfamily protein (.1) AT4G09920 52 / 1e-07 FBD, F-box and Leucine Rich Repeat domains containing protein (.1) AT3G26922 52 / 1e-07 F-box/RNI-like superfamily protein (.1) AT5G38565 52 / 2e-07 F-box/FBD-like domains containing protein (.1) AT2G39415 49 / 2e-07 F-box family protein (.1) AT5G53840 52 / 3e-07 F-box/RNI-like/FBD-like domains-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G011200 [exp] 130 / 4e-35 AT4G03220 90 / 1e-19 Protein with RNI-like/FBD-like domains (.1) Potri.015G002100 [exp] 128 / 2e-34 AT4G03220 103 / 5e-24 Protein with RNI-like/FBD-like domains (.1) Potri.001G337200 [exp] 81 / 5e-17 AT5G22660 86 / 6e-19 FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein (.1.2) Potri.011G104200 [exp] 61 / 2e-10 AT3G26922 97 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.011G104100 [exp] 55 / 2e-08 AT3G26922 96 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.014G039700 [exp] 54 / 4e-08 AT1G13570 265 / 7e-85 F-box/RNI-like superfamily protein (.1) Potri.001G322900 [exp] 54 / 8e-08 AT3G18150 166 / 1e-45 RNI-like superfamily protein (.1) Potri.011G104300 [exp] 53 / 1e-07 AT3G26922 91 / 2e-20 F-box/RNI-like superfamily protein (.1) Potri.002G132400 [exp] 53 / 1e-07 AT1G13570 251 / 3e-79 F-box/RNI-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020748 [exp] 70 / 2e-13 AT3G28410 73 / 4e-14 F-box/RNI-like superfamily protein (.1) Lus10020292 [exp] 64 / 2e-11 AT1G60410 76 / 9e-15 F-box family protein (.1) Lus10014161 [exp] 62 / 1e-10 AT5G53840 64 / 4e-11 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10008295 [exp] 60 / 1e-10 AT1G78840 67 / 2e-13 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10023425 [exp] 60 / 3e-10 AT5G56440 61 / 2e-10 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10029433 [exp] 58 / 2e-09 AT3G18150 79 / 8e-16 RNI-like superfamily protein (.1) Lus10024695 [exp] 57 / 4e-09 AT1G69630 83 / 3e-17 F-box/RNI-like superfamily protein (.1) Lus10038967 [exp] 57 / 5e-09 AT3G18150 77 / 9e-15 RNI-like superfamily protein (.1) Lus10006319 [exp] 56 / 5e-09 AT1G69630 67 / 2e-12 F-box/RNI-like superfamily protein (.1) Lus10016192 [exp] 57 / 6e-09 AT3G26922 68 / 1e-12 F-box/RNI-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.015G002001.1 pacid=42775394 polypeptide=Potri.015G002001.1.p locus=Potri.015G002001 ID=Potri.015G002001.1.v4.1 annot-version=v4.1 ATGATAAACATAGACAGATTGAATGATCTACCTGACCACGTTATCCATAAAGTTCTGTCTTTCCTTTACCTCAAACAGGCAATCCAAACTTGTGTGCTTT CTAAGCGATGGAGATTCCCGTGGACTTCTCTTCCCTGTCTCAAATTTGATAGCTACCATTTCGTCACCAAGGTACCGTCTCACCGTGATAATTCCTTCAC GTCTAAATCATTGAAAACCCTTGAATTGTCTTCTGTTGCTTTCTATCGTATGCCTGAATCTCTTGCCTTGGGTTTGGCAAATCTGACCTCCTTGAATCTC AACCATTGTTTAATATCATATGAAACCGATTTGTTCGATGACCCTTTTGCTGCTTGTTCCAATCTCAGGAGTTTATGTCTGCGCCATTGTAGCTTTTACC GTCTTAAGGTTTTAAGAATATCCGGACTCCAACTAGCTAACCTAGATACTCAAGGCTGGTTCCATTCTAATAGTTGTTGTAACAGGATTGAGATTTTCAC ACCGAAACTCACATCCTTTCGCTATAGTCATTCACGTCCTGTGGATTTCTCTCGGCTCGACCTCCCCTCCCCTCTCTTAATTTTGCTGATATTCATAGGG CTACACAATGCACGATTTGTAAGGATATCTTCTGAGACCATTGAGGTCCTCAATTTGGTTCCTGGCTTACAAGCACGACAGACCTGCCCCTTCAAAAGAT TGAAGTCTTTGAAAGTGCATGGCGAGGATAACTCGTTTGTGATACCTGATCATGTGCAGATCTACTTACTTGGTGATGAACTCCCTGAAGAAACCTTACA CATGGAAGGCAGTTTTCTTGCAGAACCGGGGGATCATACGGATCACCTATCCACATCCCTGCTCGCGGATCTCACAAGACTTTAA
AA sequence Show only first row Show all	>Potri.015G002001.1 pacid=42775394 polypeptide=Potri.015G002001.1.p locus=Potri.015G002001 ID=Potri.015G002001.1.v4.1 annot-version=v4.1 MINIDRLNDLPDHVIHKVLSFLYLKQAIQTCVLSKRWRFPWTSLPCLKFDSYHFVTKVPSHRDNSFTSKSLKTLELSSVAFYRMPESLALGLANLTSLNL NHCLISYETDLFDDPFAACSNLRSLCLRHCSFYRLKVLRISGLQLANLDTQGWFHSNSCCNRIEIFTPKLTSFRYSHSRPVDFSRLDLPSPLLILLIFIG LHNARFVRISSETIEVLNLVPGLQARQTCPFKRLKSLKVHGEDNSFVIPDHVQIYLLGDELPEETLHMEGSFLAEPGDHTDHLSTSLLADLTRL

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G04230			FBD, F-box and Leucine Rich Re...		Potri.015G002001 [exp]	0	1
AT5G63840		PSL5, RSW3	RADIAL SWELLING 3, PRIORITY IN...		Potri.005G069000 [exp]	3.87	0.8540
AT4G22740			glycine-rich protein (.1.2)		Potri.001G117400 [exp]	13.41	0.8442
AT5G04010			F-box family protein (.1)		Potri.004G077301 [exp]	14.96	0.8339
AT1G04840			Tetratricopeptide repeat (TPR)...		Potri.001G316500 [exp]	18.33	0.8467
					Potri.003G088350 [exp]	25.19	0.8433
AT5G28460			Pentatricopeptide repeat (PPR)...		Potri.014G090400 [exp]	26.45	0.8442
AT2G26140		FTSH4	FTSH protease 4 (.1)		Potri.006G227700 [exp]	27.71	0.8036	Pt-FTSH4.1
AT4G36650		ATPBRP	plant-specific TFIIB-related p...		Potri.007G027600 [exp]	30.93	0.8244
AT2G04520			Nucleic acid-binding, OB-fold-...		Potri.014G093801 [exp]	32.03	0.8056
AT3G24000			Tetratricopeptide repeat (TPR)...		Potri.006G001200 [exp]	32.03	0.8326

Compare expression of checked genes

Potri.015G002001 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.