Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G03220 103 / 4e-24 Protein with RNI-like/FBD-like domains (.1) AT1G66300 85 / 5e-18 F-box/RNI-like/FBD-like domains-containing protein (.1) AT1G13570 82 / 3e-17 F-box/RNI-like superfamily protein (.1) AT1G66310 82 / 5e-17 F-box/RNI-like/FBD-like domains-containing protein (.1) AT1G69630 81 / 1e-16 F-box/RNI-like superfamily protein (.1) AT5G22720 81 / 3e-16 F-box/RNI-like superfamily protein (.1.2) AT1G66320 80 / 4e-16 F-box/RNI-like superfamily protein (.1) AT4G09920 78 / 6e-16 FBD, F-box and Leucine Rich Repeat domains containing protein (.1) AT4G10400 78 / 1e-15 F-box/RNI-like/FBD-like domains-containing protein (.1.2) AT1G78760 77 / 2e-15 F-box/RNI-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G011200 [exp] 276 / 8e-91 AT4G03220 90 / 1e-19 Protein with RNI-like/FBD-like domains (.1) Potri.001G337200 [exp] 182 / 1e-54 AT5G22660 86 / 6e-19 FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein (.1.2) Potri.015G002001 [exp] 179 / 5e-54 AT2G04230 59 / 9e-10 FBD, F-box and Leucine Rich Repeat domains containing protein (.1) Potri.011G104200 [exp] 145 / 4e-40 AT3G26922 97 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.011G104100 [exp] 140 / 3e-38 AT3G26922 96 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.011G104300 [exp] 139 / 1e-37 AT3G26922 91 / 2e-20 F-box/RNI-like superfamily protein (.1) Potri.011G024200 [exp] 92 / 3e-20 AT4G26340 105 / 1e-24 F-box/RNI-like/FBD-like domains-containing protein (.1) Potri.011G024300 [exp] 86 / 3e-18 AT3G49030 116 / 3e-28 FBD, F-box and Leucine Rich Repeat domains containing protein (.1.2) Potri.013G151200 [exp] 82 / 4e-17 AT4G03220 417 / 1e-141 Protein with RNI-like/FBD-like domains (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002239 [exp] 157 / 9e-45 AT1G69630 91 / 5e-20 F-box/RNI-like superfamily protein (.1) Lus10024696 [exp] 154 / 2e-43 AT5G22720 75 / 1e-14 F-box/RNI-like superfamily protein (.1.2) Lus10042477 [exp] 148 / 5e-41 AT1G16930 77 / 2e-15 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10026190 [exp] 147 / 1e-40 AT1G16930 80 / 3e-16 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10007058 [exp] 144 / 2e-39 AT5G56810 77 / 2e-15 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10029587 [exp] 144 / 2e-39 AT5G02930 74 / 3e-14 F-box/RNI-like superfamily protein (.1) Lus10032255 [exp] 143 / 3e-39 AT5G02930 85 / 6e-18 F-box/RNI-like superfamily protein (.1) Lus10020748 [exp] 142 / 6e-39 AT3G28410 73 / 4e-14 F-box/RNI-like superfamily protein (.1) Lus10029586 [exp] 137 / 7e-37 AT3G18150 78 / 2e-15 RNI-like superfamily protein (.1) Lus10006513 [exp] 135 / 2e-36 AT5G02930 80 / 3e-16 F-box/RNI-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [poplar] [flax] F-box PF00646 [poplar] [flax] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Potri.015G002100.2 pacid=42775580 polypeptide=Potri.015G002100.2.p locus=Potri.015G002100 ID=Potri.015G002100.2.v4.1 annot-version=v4.1 ATGGAAAATGAGGAAGATAAAGCTAGAAGTAGCTGCAGAAGCGAAAATATAGACAGATTGAGTGATCTACCTGATAGCATAATTCATAAAATTCTATCCT TGGTTGACCTCAGATGTGCTGTCCAGACAAGTGTACTGTCCAAAAGGTGGAGATTCTTGTGGACTTCACTTACTGATCTCAATTTCAATGGAACCTGTAT GGATTTCACGAACTTCGTAACTTTCAATAGATTCGTGAGTAGAGTATTATCTACTCGTGAGGACAGCAATGTTTACAAGATTCAACTCTATTCCACTTGG AGCCCCCATCATTCTCTCTTGGATATGGTCATAAAATATGCAGTTTCCCATCACATTCAGAATATGGTCATTAATTATGGTCATTCCACTATCCGATCTT TCTCTTTACCGCCTGCATTTTTAACATGTCAATCGTTGAAAACCCTACAATTATCTGGATTCAATTTTAAAGCTTTGGGTTTTGCTCTCCCGAATCTCAT CTCCTTGAGTCTCTCCCACTGTTCATTTACCAATCCAAGTGATTTCGATGATCCTTTTGCTAGTTGCCTGAAATTGAAAAATCTAAGCCTACGCTCTTGC AGTTTTCTGTCGTCAAAGGTCTTGAAAATATCTGGGCTCCAGTTACTTAACCTAGAAATTGTAGGCCTTGGATATATGAATCTAGCAGGATTACTGTATA GGATTGATATTTTTGCACCAAAGCTCATCTCTTTCGTCTACAAACTCTCTCATGTAGTGGATTTCTCTGGACTCCACCTTCCCTCCCTTAATATTGCCCG TGTTCATGTTTGTACCAAGCAAGACAAGAAGAAAGAGGCGTATCTGGGCTTGATCAATATGTTCAAAGGGCTTGGCAATGCTCAATCAGTCATGCTACAT TCTCAAACCATTGAGGTCCTTGGTTCATTTCCTGGTTTACTAGAACAAGAACCTTCTCCTTTTAAAAGATTGAAGTCTTTGCAAGTTGCCCCCAACAATA AACCTTTTGTGCCTCCTCATGTGATGACCTACTTACTTGGTGGCACTCCTCTCGCCGAAACTATATATGCAGATTACCTATAG
AA sequence Show only first row Show all	>Potri.015G002100.2 pacid=42775580 polypeptide=Potri.015G002100.2.p locus=Potri.015G002100 ID=Potri.015G002100.2.v4.1 annot-version=v4.1 MENEEDKARSSCRSENIDRLSDLPDSIIHKILSLVDLRCAVQTSVLSKRWRFLWTSLTDLNFNGTCMDFTNFVTFNRFVSRVLSTREDSNVYKIQLYSTW SPHHSLLDMVIKYAVSHHIQNMVINYGHSTIRSFSLPPAFLTCQSLKTLQLSGFNFKALGFALPNLISLSLSHCSFTNPSDFDDPFASCLKLKNLSLRSC SFLSSKVLKISGLQLLNLEIVGLGYMNLAGLLYRIDIFAPKLISFVYKLSHVVDFSGLHLPSLNIARVHVCTKQDKKKEAYLGLINMFKGLGNAQSVMLH SQTIEVLGSFPGLLEQEPSPFKRLKSLQVAPNNKPFVPPHVMTYLLGGTPLAETIYADYL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G03220			Protein with RNI-like/FBD-like...		Potri.015G002100 [exp]	0	1
AT2G45680	TCP	TCP9	TCP family transcription facto...		Potri.003G120201 [exp]	1.41	0.9184
AT1G58470		XF41, ATRBP1	RNA-binding protein 1 (.1)		Potri.002G115000 [exp]	7.34	0.8784
					Potri.006G239650 [exp]	7.74	0.8992
AT2G32600			hydroxyproline-rich glycoprote...		Potri.016G097600 [exp]	9.16	0.8770
AT1G56345			Pseudouridine synthase family ...		Potri.013G009300 [exp]	11.22	0.8708
AT5G22040			unknown protein		Potri.008G001700 [exp]	13.41	0.8481
AT5G57340			unknown protein		Potri.006G165500 [exp]	18.52	0.8435
AT4G03200			catalytics (.1.2)		Potri.002G209900 [exp]	19.97	0.8366
AT2G45830		DTA2	downstream target of AGL15 2 (...		Potri.014G081600 [exp]	21.90	0.8560
AT3G55730	MYB	ATMYB109	myb domain protein 109 (.1)		Potri.008G062700 [exp]	22.00	0.8456

Compare expression of checked genes

Potri.015G002100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.